What to Learn from a Few Visible Transitions’ Statistics?
Interpreting partial information collected from systems subject to noise is a key problem across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables that result from coarse-graining the internal states of a physical system. However, most experimental apparatuses c...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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American Physical Society
2022-12-01
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| Series: | Physical Review X |
| Online Access: | http://doi.org/10.1103/PhysRevX.12.041026 |
| _version_ | 1811208204303990784 |
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| author | Pedro E. Harunari Annwesha Dutta Matteo Polettini Édgar Roldán |
| author_facet | Pedro E. Harunari Annwesha Dutta Matteo Polettini Édgar Roldán |
| author_sort | Pedro E. Harunari |
| collection | DOAJ |
| description | Interpreting partial information collected from systems subject to noise is a key problem across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables that result from coarse-graining the internal states of a physical system. However, most experimental apparatuses can only detect a partial set of transitions, while internal states of the physical system are blurred or inaccessible. Here, we consider an observer who records a time series of occurrences of one or several transitions performed by a system, under the assumption that its underlying dynamics is Markovian. We pose the question of how one can use the transitions’ information to make inferences of dynamical, thermodynamical, and biochemical properties. First, elaborating on first-passage time techniques, we derive analytical expressions for the probabilities of consecutive transitions and for the time elapsed between them, which we call intertransition times. Second, we derive a lower bound for the entropy production rate that equals the sum of two non-negative contributions, one due to the statistics of transitions and a second due to the statistics of intertransition times. We also show that when only one current is measured, our estimate still detects irreversibility even in the absence of net currents in the transition time series. Third, we verify our results with numerical simulations using unbiased estimates of entropy production, which we make available as an open-source toolbox. We illustrate the developed framework in experimentally validated biophysical models of kinesin and dynein molecular motors, and in a minimal model for template-directed polymerization. Our numerical results reveal that while entropy production is entailed in the statistics of two successive transitions of the same type (i.e., repeated transitions), the statistics of two different successive transitions (i.e., alternated transitions) can probe the existence of an underlying disorder in the motion of a molecular motor. Taken all together, our results highlight the power of inference from transition statistics ranging from thermodynamic quantities to network-topology properties of Markov processes. |
| first_indexed | 2024-04-12T04:18:14Z |
| format | Article |
| id | doaj.art-cb0a404b0798439b8eb68097200ecc10 |
| institution | Directory Open Access Journal |
| issn | 2160-3308 |
| language | English |
| last_indexed | 2024-04-12T04:18:14Z |
| publishDate | 2022-12-01 |
| publisher | American Physical Society |
| record_format | Article |
| series | Physical Review X |
| spelling | doaj.art-cb0a404b0798439b8eb68097200ecc102022-12-22T03:48:21ZengAmerican Physical SocietyPhysical Review X2160-33082022-12-0112404102610.1103/PhysRevX.12.041026What to Learn from a Few Visible Transitions’ Statistics?Pedro E. HarunariAnnwesha DuttaMatteo PolettiniÉdgar RoldánInterpreting partial information collected from systems subject to noise is a key problem across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables that result from coarse-graining the internal states of a physical system. However, most experimental apparatuses can only detect a partial set of transitions, while internal states of the physical system are blurred or inaccessible. Here, we consider an observer who records a time series of occurrences of one or several transitions performed by a system, under the assumption that its underlying dynamics is Markovian. We pose the question of how one can use the transitions’ information to make inferences of dynamical, thermodynamical, and biochemical properties. First, elaborating on first-passage time techniques, we derive analytical expressions for the probabilities of consecutive transitions and for the time elapsed between them, which we call intertransition times. Second, we derive a lower bound for the entropy production rate that equals the sum of two non-negative contributions, one due to the statistics of transitions and a second due to the statistics of intertransition times. We also show that when only one current is measured, our estimate still detects irreversibility even in the absence of net currents in the transition time series. Third, we verify our results with numerical simulations using unbiased estimates of entropy production, which we make available as an open-source toolbox. We illustrate the developed framework in experimentally validated biophysical models of kinesin and dynein molecular motors, and in a minimal model for template-directed polymerization. Our numerical results reveal that while entropy production is entailed in the statistics of two successive transitions of the same type (i.e., repeated transitions), the statistics of two different successive transitions (i.e., alternated transitions) can probe the existence of an underlying disorder in the motion of a molecular motor. Taken all together, our results highlight the power of inference from transition statistics ranging from thermodynamic quantities to network-topology properties of Markov processes.http://doi.org/10.1103/PhysRevX.12.041026 |
| spellingShingle | Pedro E. Harunari Annwesha Dutta Matteo Polettini Édgar Roldán What to Learn from a Few Visible Transitions’ Statistics? Physical Review X |
| title | What to Learn from a Few Visible Transitions’ Statistics? |
| title_full | What to Learn from a Few Visible Transitions’ Statistics? |
| title_fullStr | What to Learn from a Few Visible Transitions’ Statistics? |
| title_full_unstemmed | What to Learn from a Few Visible Transitions’ Statistics? |
| title_short | What to Learn from a Few Visible Transitions’ Statistics? |
| title_sort | what to learn from a few visible transitions statistics |
| url | http://doi.org/10.1103/PhysRevX.12.041026 |
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