Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community

Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community

An inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, one parasite, one yeast, one DNA, and two RNA viruses. Each participant appl...

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Bibliographic Details
Main Authors: Claudia Sala, Hanne Mordhorst, Josephine Grützke, Annika Brinkmann, Thomas N. Petersen, Casper Poulsen, Paul D. Cotter, Fiona Crispie, Richard J. Ellis, Gastone Castellani, Clara Amid, Mikhayil Hakhverdyan, Soizick Le Guyader, Gerardo Manfreda, Joël Mossong, Andreas Nitsche, Catherine Ragimbeau, Julien Schaeffer, Joergen Schlundt, Moon Y. F. Tay, Frank M. Aarestrup, Rene S. Hendriksen, Sünje Johanna Pamp, Alessandra De Cesare
Format: Article
Language:English
Published: MDPI AG 2020-11-01
Series:Microorganisms
Subjects:
shotgun metagenomics
smoked salmon
proficiency test
experimentally spiked samples
wet-lab protocols
Online Access:https://www.mdpi.com/2076-2607/8/12/1861

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