Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China
The complete chloroplast genome from Cardiocrinum cathayanum (Liliaceae), an important herbaceous perennial species of the Liliaceae, is determined in this study. We characterized its whole plastid genome sequence using the Illumina sequencing platform. The whole plastid genome of C. cathayanum was...
| Main Authors: | , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1591178 |
| _version_ | 1797639949403553792 |
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| author | Ning Wang Ji-Qing Bai Peng-Bin Dong Ting-Ting Zhang Ruo-Nan Wang Jiu-Xia Wang Hong-Yan Liu Ru-Yun Liang Pei-Pei Tuo Xiang-Ting Jing Xiao-Juan Wang |
| author_facet | Ning Wang Ji-Qing Bai Peng-Bin Dong Ting-Ting Zhang Ruo-Nan Wang Jiu-Xia Wang Hong-Yan Liu Ru-Yun Liang Pei-Pei Tuo Xiang-Ting Jing Xiao-Juan Wang |
| author_sort | Ning Wang |
| collection | DOAJ |
| description | The complete chloroplast genome from Cardiocrinum cathayanum (Liliaceae), an important herbaceous perennial species of the Liliaceae, is determined in this study. We characterized its whole plastid genome sequence using the Illumina sequencing platform. The whole plastid genome of C. cathayanum was a typical quadripartite circular molecule with 152,502 bp in length, comprised of a large single copy region of 82,517 bp, a small single copy region of 17,311 bp, and two inverted repeat regions of 26,337 bp. A total of 136 genes, 84 protein-coding genes, 38 tRNA, and 8 rRNA genes were identified. The GC content in the chloroplast genome, LSC region, SSC region, and IR region were 42.5, 34.9, 30.8, and 42.5%, respectively. Phylogenetic analysis suggested that C. cathayanum is more closely related with Allium cepa, Allium prattii, Amana edulis, and Erythronium sibiricum, these species were clustered into a clade with high bootstrap support. |
| first_indexed | 2024-03-11T13:23:55Z |
| format | Article |
| id | doaj.art-cbda7c5070a44a1a900521d368325928 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:55Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-cbda7c5070a44a1a900521d3683259282023-11-03T10:06:42ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411294129510.1080/23802359.2019.15911781591178Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in ChinaNing Wang0Ji-Qing Bai1Peng-Bin Dong2Ting-Ting Zhang3Ruo-Nan Wang4Jiu-Xia Wang5Hong-Yan Liu6Ru-Yun Liang7Pei-Pei Tuo8Xiang-Ting Jing9Xiao-Juan Wang10Northwest UniversityCollege of Pharmacy, Shaanxi University of Chinese MedicineNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityThe complete chloroplast genome from Cardiocrinum cathayanum (Liliaceae), an important herbaceous perennial species of the Liliaceae, is determined in this study. We characterized its whole plastid genome sequence using the Illumina sequencing platform. The whole plastid genome of C. cathayanum was a typical quadripartite circular molecule with 152,502 bp in length, comprised of a large single copy region of 82,517 bp, a small single copy region of 17,311 bp, and two inverted repeat regions of 26,337 bp. A total of 136 genes, 84 protein-coding genes, 38 tRNA, and 8 rRNA genes were identified. The GC content in the chloroplast genome, LSC region, SSC region, and IR region were 42.5, 34.9, 30.8, and 42.5%, respectively. Phylogenetic analysis suggested that C. cathayanum is more closely related with Allium cepa, Allium prattii, Amana edulis, and Erythronium sibiricum, these species were clustered into a clade with high bootstrap support.http://dx.doi.org/10.1080/23802359.2019.1591178cardiocrinum cathayanumchloroplast genomephylogenetic tree |
| spellingShingle | Ning Wang Ji-Qing Bai Peng-Bin Dong Ting-Ting Zhang Ruo-Nan Wang Jiu-Xia Wang Hong-Yan Liu Ru-Yun Liang Pei-Pei Tuo Xiang-Ting Jing Xiao-Juan Wang Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China Mitochondrial DNA. Part B. Resources cardiocrinum cathayanum chloroplast genome phylogenetic tree |
| title | Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China |
| title_full | Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China |
| title_fullStr | Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China |
| title_full_unstemmed | Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China |
| title_short | Characterization of the complete plastid genome of Cardiocrinum cathayanum, an endemic medicinal plant in China |
| title_sort | characterization of the complete plastid genome of cardiocrinum cathayanum an endemic medicinal plant in china |
| topic | cardiocrinum cathayanum chloroplast genome phylogenetic tree |
| url | http://dx.doi.org/10.1080/23802359.2019.1591178 |
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