Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer

BackgroundEndocrine therapy (ET) is the mainstay of treatment for hormone receptor-positive human epidermal growth factor receptor 2 (HER2)-negative metastatic breast cancer; however, adaptive mechanisms emerge in about 25–30% of cases through alterations in the estrogen receptor ligand-binding doma...

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Main Authors: Lorenzo Gerratana, Debora Basile, Alessandra Franzoni, Lorenzo Allegri, Davide Viotto, Carla Corvaja, Lucia Bortot, Elisa Bertoli, Silvia Buriolla, Giada Targato, Lucia Da Ros, Stefania Russo, Marta Bonotto, Barbara Belletti, Gustavo Baldassarre, Giuseppe Damante, Fabio Puglisi
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-09-01
Series:Frontiers in Oncology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fonc.2020.550185/full
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author Lorenzo Gerratana
Lorenzo Gerratana
Debora Basile
Debora Basile
Alessandra Franzoni
Lorenzo Allegri
Davide Viotto
Carla Corvaja
Carla Corvaja
Lucia Bortot
Lucia Bortot
Elisa Bertoli
Elisa Bertoli
Silvia Buriolla
Silvia Buriolla
Giada Targato
Giada Targato
Lucia Da Ros
Stefania Russo
Marta Bonotto
Barbara Belletti
Gustavo Baldassarre
Giuseppe Damante
Fabio Puglisi
Fabio Puglisi
author_facet Lorenzo Gerratana
Lorenzo Gerratana
Debora Basile
Debora Basile
Alessandra Franzoni
Lorenzo Allegri
Davide Viotto
Carla Corvaja
Carla Corvaja
Lucia Bortot
Lucia Bortot
Elisa Bertoli
Elisa Bertoli
Silvia Buriolla
Silvia Buriolla
Giada Targato
Giada Targato
Lucia Da Ros
Stefania Russo
Marta Bonotto
Barbara Belletti
Gustavo Baldassarre
Giuseppe Damante
Fabio Puglisi
Fabio Puglisi
author_sort Lorenzo Gerratana
collection DOAJ
description BackgroundEndocrine therapy (ET) is the mainstay of treatment for hormone receptor-positive human epidermal growth factor receptor 2 (HER2)-negative metastatic breast cancer; however, adaptive mechanisms emerge in about 25–30% of cases through alterations in the estrogen receptor ligand-binding domain, with a consequent ligand-independent estrogen receptor activity. Epigenetic-mediated events are less known and potentially involved in alternative mechanisms of resistance. The aim of this study was to test the feasibility of estrogen receptor 1 (ESR1) epigenetic characterization through liquid biopsy and to show its potential longitudinal application for an early ET sensitivity assessment.MethodsA cohort of 49 women with hormone receptor-positive HER2-negative MBC was prospectively enrolled and characterized through circulating tumor DNA using methylation-specific droplet digital PCR (MS-ddPCR) before treatment start (BL) and after 3 months concomitantly with computed tomography (CT) scan restaging (EV1). ESR1 epigenetic status was defined by assessing the methylation of its main promoters (promA and promB). The most established cell-free tumor DNA (ctDNA) factors associated with ET resistance [ESR1 and phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha (PIK3CA) mutations] were assessed through next-generation sequencing. Associations were tested through Mann–Whitney U test, matched pairs variations through Wilcoxon signed rank test, and survival was analyzed by log-rank test.ResultsThe ET backbone was mainly based on aromatase inhibitors (AIs) (70.83%) in association with CDK4/6 inhibitors (93.75%). Significantly lower promA levels at baseline were observed in patients with liver metastases (P = 0.0212) and in patients with ESR1 mutations (P = 0.0091). No significant impact on PFS was observed for promA (P = 0.3777) and promB (P = 0.7455) dichotomized at the median while a ≥2-fold increase in promB or in either promA or promB at EV1 resulted in a significantly worse prognosis (respectively P = 0.0189, P = 0.0294). A significant increase at EV1 was observed for promB among patients with PIK3CA mutation (P = 0.0173). A trend was observed for promB in ESR1 wild-type patients and for promA in the ESR1 mutant subgroup.ConclusionThe study proofed the concept of an epigenetic characterization strategy based on ctDNA and is capable of being integrated in the current clinical workflow to give useful insights on treatment sensitivity.
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spelling doaj.art-cc9ff308591747ecb18dbb45a26106362022-12-21T18:43:37ZengFrontiers Media S.A.Frontiers in Oncology2234-943X2020-09-011010.3389/fonc.2020.550185550185Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast CancerLorenzo Gerratana0Lorenzo Gerratana1Debora Basile2Debora Basile3Alessandra Franzoni4Lorenzo Allegri5Davide Viotto6Carla Corvaja7Carla Corvaja8Lucia Bortot9Lucia Bortot10Elisa Bertoli11Elisa Bertoli12Silvia Buriolla13Silvia Buriolla14Giada Targato15Giada Targato16Lucia Da Ros17Stefania Russo18Marta Bonotto19Barbara Belletti20Gustavo Baldassarre21Giuseppe Damante22Fabio Puglisi23Fabio Puglisi24Department of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyInstitute of Human Genetics, ASUFC University Hospital, Udine, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyUnit of Molecular Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Oncology, ASUFC University Hospital, Udine, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Oncology, ASUFC University Hospital, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyDepartment of Oncology, ASUFC University Hospital, Udine, ItalyDepartment of Oncology, ASUFC University Hospital, Udine, ItalyUnit of Molecular Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyUnit of Molecular Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyInstitute of Human Genetics, ASUFC University Hospital, Udine, ItalyDepartment of Medicine (DAME), University of Udine, Udine, ItalyDepartment of Medical Oncology, Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, Aviano, ItalyBackgroundEndocrine therapy (ET) is the mainstay of treatment for hormone receptor-positive human epidermal growth factor receptor 2 (HER2)-negative metastatic breast cancer; however, adaptive mechanisms emerge in about 25–30% of cases through alterations in the estrogen receptor ligand-binding domain, with a consequent ligand-independent estrogen receptor activity. Epigenetic-mediated events are less known and potentially involved in alternative mechanisms of resistance. The aim of this study was to test the feasibility of estrogen receptor 1 (ESR1) epigenetic characterization through liquid biopsy and to show its potential longitudinal application for an early ET sensitivity assessment.MethodsA cohort of 49 women with hormone receptor-positive HER2-negative MBC was prospectively enrolled and characterized through circulating tumor DNA using methylation-specific droplet digital PCR (MS-ddPCR) before treatment start (BL) and after 3 months concomitantly with computed tomography (CT) scan restaging (EV1). ESR1 epigenetic status was defined by assessing the methylation of its main promoters (promA and promB). The most established cell-free tumor DNA (ctDNA) factors associated with ET resistance [ESR1 and phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha (PIK3CA) mutations] were assessed through next-generation sequencing. Associations were tested through Mann–Whitney U test, matched pairs variations through Wilcoxon signed rank test, and survival was analyzed by log-rank test.ResultsThe ET backbone was mainly based on aromatase inhibitors (AIs) (70.83%) in association with CDK4/6 inhibitors (93.75%). Significantly lower promA levels at baseline were observed in patients with liver metastases (P = 0.0212) and in patients with ESR1 mutations (P = 0.0091). No significant impact on PFS was observed for promA (P = 0.3777) and promB (P = 0.7455) dichotomized at the median while a ≥2-fold increase in promB or in either promA or promB at EV1 resulted in a significantly worse prognosis (respectively P = 0.0189, P = 0.0294). A significant increase at EV1 was observed for promB among patients with PIK3CA mutation (P = 0.0173). A trend was observed for promB in ESR1 wild-type patients and for promA in the ESR1 mutant subgroup.ConclusionThe study proofed the concept of an epigenetic characterization strategy based on ctDNA and is capable of being integrated in the current clinical workflow to give useful insights on treatment sensitivity.https://www.frontiersin.org/article/10.3389/fonc.2020.550185/fullcirculating tumor DNADNA methylationendocrine treatmentESR1liquid biopsy
spellingShingle Lorenzo Gerratana
Lorenzo Gerratana
Debora Basile
Debora Basile
Alessandra Franzoni
Lorenzo Allegri
Davide Viotto
Carla Corvaja
Carla Corvaja
Lucia Bortot
Lucia Bortot
Elisa Bertoli
Elisa Bertoli
Silvia Buriolla
Silvia Buriolla
Giada Targato
Giada Targato
Lucia Da Ros
Stefania Russo
Marta Bonotto
Barbara Belletti
Gustavo Baldassarre
Giuseppe Damante
Fabio Puglisi
Fabio Puglisi
Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
Frontiers in Oncology
circulating tumor DNA
DNA methylation
endocrine treatment
ESR1
liquid biopsy
title Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
title_full Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
title_fullStr Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
title_full_unstemmed Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
title_short Plasma-Based Longitudinal Evaluation of ESR1 Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer
title_sort plasma based longitudinal evaluation of esr1 epigenetic status in hormone receptor positive her2 negative metastatic breast cancer
topic circulating tumor DNA
DNA methylation
endocrine treatment
ESR1
liquid biopsy
url https://www.frontiersin.org/article/10.3389/fonc.2020.550185/full
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