Development of a cost-effective metabarcoding strategy for analysis of the marine phytoplankton community

Development of a cost-effective metabarcoding strategy for analysis of the marine phytoplankton community

We developed a cost-effective metabarcoding strategy to analyze phytoplankton community structure using the Illumina MiSeq system. The amplicons (404–411 bp) obtained by end-pairing of two reads were sufficiently long to distinguish algal species and provided barcode data equivalent to those generat...

Full description

Bibliographic Details
Main Authors:	Tae-Ho Yoon, Hye-Eun Kang, Chang-Keun Kang, Sang Heon Lee, Do-Hwan Ahn, Hyun Park, Hyun-Woo Kim
Format:	Article
Language:	English
Published:	PeerJ Inc. 2016-06-01
Series:	PeerJ
Subjects:	Barcode Phytoplankton Next-generation sequencing Oceanography Genomics
Online Access:	https://peerj.com/articles/2115.pdf

Similar Items

Ecological Responses of Core Phytoplankton by Latitudinal Differences in the Arctic Ocean in Late Summer Revealed by 18S rDNA Metabarcoding
by: Hyoung Min Joo, et al.
Published: (2022-06-01)

Phytoplanktons and DNA barcoding: Characterization and molecular analysis of phytoplanktons on the Persian Gulf
by: Esmat Alemzadeh, et al.
Published: (2014-08-01)

In situ Measurements of Phytoplankton Fluorescence Using Low Cost Electronics
by: Dana L. Wright, et al.
Published: (2013-06-01)

Marine phytoplankton /
by: Kersey, William T., et al.
Published: (c200)

Putting marine microbes on the map: determining the global distribution of marine picophytoplankton using a combination of satellite and field data
by: Lange, P
Published: (2017)

Characteristics of Different Size Phytoplankton for Primary Production and Biochemical Compositions in the Western East/Japan Sea
by: Jae Joong Kang, et al.
Published: (2020-12-01)

A metabarcode based (species) inventory of the northern Adriatic phytoplankton
by: Lana Grižančić, et al.
Published: (2023-09-01)

Effect of photoacclimation on bio-optical properties of marine phytoplankton
by: Phongphattarawat, S
Published: (2020)

Corrigendum for: “Oomycete-specific ITS primers for identification and metabarcoding” published in MycoKeys, doi: 10.3897/mycokeys.14.9244
by: Taavi Riit, et al.
Published: (2018-11-01)

Marine Microeukaryote Metatranscriptomics: Sample Processing and Bioinformatic Workflow Recommendations for Ecological Applications
by: Natalie R. Cohen, et al.
Published: (2022-06-01)

Spatiotemporal Variation in Phytoplankton Community Driven by Environmental Factors in the Northern East China Sea
by: Yejin Kim, et al.
Published: (2020-09-01)

Seasonal Compositions of Size-Fractionated Surface Phytoplankton Communities in the Yellow Sea
by: Yejin Kim, et al.
Published: (2022-08-01)

Metabarcoding analysis of the stomach contents of the Antarctic Toothfish (Dissostichus mawsoni) collected in the Antarctic Ocean
by: Tae-Ho Yoon, et al.
Published: (2017-11-01)

Ecology of phytoplankton /
by: 365869 Reynolds, Colin S.
Published: (2006)

Luminescence and photosynthesis of marine phytoplankton - a brief presentation of new results
by: Bogdan Wo¼niak, et al.
Published: (2000-06-01)

Estimation of Phytoplankton Size Classes in the Littoral Sea of Korea Using a New Algorithm Based on Deep Learning
by: Jae Joong Kang, et al.
Published: (2022-10-01)

The influence of environmental factors on phytoplankton composition and dynamics along the Johor Strait using conventional and metabarcoding approaches
by: Mohd. Din, Monaliza
Published: (2023)

Methods to Estimate the Diversity in the Marine Photosynthetic Protist Community with Illustrations from Case Studies: A Review
by: Linda K. Medlin, et al.
Published: (2010-07-01)

Cell-associated proteolytic enzymes from marine phytoplankton /
by: 388900 John, A. B., et al.

Water Quality Improvement Shifts the Dominant Phytoplankton Group From Cryptophytes to Diatoms in a Coastal Ecosystem
by: Yoonja Kang, et al.
Published: (2021-08-01)

Satellite-Derived Protein Concentration of Phytoplankton in the Southwestern East/Japan Sea
by: Hyeonji Bae, et al.
Published: (2021-02-01)

Contribution of Small Phytoplankton to Primary Production in the Northern Bering and Chukchi Seas
by: Jung-Woo Park, et al.
Published: (2022-01-01)

Physical influences on phytoplankton ecology : models and observations
by: Clayton, Sophie A
Published: (2013)

Computational analysis of the biophysical controls on Southern Ocean phytoplankton ecosystem dynamics
by: Rohr, Tyler W.
Published: (2019)

Phytoplankton Ecology : Structure, Function and Fluctuation /
by: Harris, Graham P., author 199502
Published: (1986)

First Estimation of the Annual Biosynthetic Calorie Production by Phytoplankton in the Yellow Sea, South Sea of Korea, East China Sea, and East Sea
by: Hyo-Keun Jang, et al.
Published: (2023-07-01)

Phytoplankton Pigments Reveal Size Structure and Interannual Variability of the Coastal Phytoplankton Community (Adriatic Sea)
by: Vesna Flander-Putrle, et al.
Published: (2021-12-01)

Estimating phytoplankton growth rates from compositional data
by: Thomas, Lorraine (Lorraine Marie)
Published: (2008)

Complex Plastids and the Evolution of the Marine Phytoplankton
by: Ansgar Gruber, et al.
Published: (2023-09-01)

Iron Uptake Mechanisms in Marine Phytoplankton
by: Robert Sutak, et al.
Published: (2020-11-01)

Early Alert of Biological Risk in a Coastal Lagoon Through eDNA Metabarcoding
by: Marcos Suarez-Menendez, et al.
Published: (2020-02-01)

Phytoplankton DNA metabarcoding in four sectors of the SW Atlantic in the context of the global ocean
by: Federico M. Ibarbalz, et al.
Published: (2022-09-01)

Dynamics of a stochastic phytoplankton-toxin phytoplankton–zooplankton model
by: Zhewen Chen, et al.
Published: (2019-08-01)

Photophysiological Characterization of Phytoplankton by Measuring Pigment Production Rates: A Description of Detail Method and a Case Study
by: Jae-Joong Kang, et al.
Published: (2023-09-01)

Characterization of the complete mitochondrial genome of Mauritian sardinella, Sardinella jussieu (Lacepède, 1803), collected in the Banten Bay, Indonesia
by: Sinar Pagi Sektiana, et al.
Published: (2017-10-01)

Correlations between the distribution of phytoplankton and nutrient with the growth of Perna Viridis /
by: Nadzirah Md. Hasni, 1988-, et al.
Published: (2010)

The Contribution of Small Phytoplankton Communities to the Total Dissolved Inorganic Nitrogen Assimilation Rates in the East/Japan Sea: An Experimental Evaluation
by: Panthalil S. Bhavya, et al.
Published: (2020-10-01)

Spatial and temporal distribution of phytoplankton community in relation to environmental factors in the southern coastal waters of Korea
by: Yanxu Sun, et al.
Published: (2022-09-01)

Copper uptake and subcellular distribution in five marine phytoplankton species
by: Peng Zhang, et al.
Published: (2022-11-01)

Spatial Patterns of Macromolecular Composition of Phytoplankton in the Arctic Ocean
by: Keyseok Choe, et al.
Published: (2021-09-01)