Revealing protein functions based on relationships of interacting proteins and GO terms

Revealing protein functions based on relationships of interacting proteins and GO terms

Abstract Background In recent years, numerous computational methods predicted protein function based on the protein-protein interaction (PPI) network. These methods supposed that two proteins share the same function if they interact with each other. However, it is reported by recent studies that the...

Full description

Bibliographic Details
Main Authors:	Zhixia Teng, Maozu Guo, Xiaoyan Liu, Zhen Tian, Kai Che
Format:	Article
Language:	English
Published:	BMC 2017-09-01
Series:	Journal of Biomedical Semantics
Subjects:	Protein function Interacting protein Gene ontology Directed network
Online Access:	http://link.springer.com/article/10.1186/s13326-017-0139-8

Similar Items

GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings
by: Xiaoshi Zhong, et al.
Published: (2019-12-01)

Computational discovery of direct associations between GO terms and protein domains
by: Seyed Ziaeddin Alborzi, et al.
Published: (2018-11-01)

The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction
by: Mansheng Li, et al.
Published: (2021-11-01)

Predicting protein-protein interactions using high-quality non-interacting pairs
by: Long Zhang, et al.
Published: (2018-12-01)

PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms
by: Kaustav Sengupta, et al.
Published: (2022-09-01)

Prediction of anti-microtubular target proteins of tubulins and their interacting proteins using Gene Ontology tools
by: Polani B. Ramesh Babu
Published: (2023-07-01)

A Novel Network-Based Algorithm for Predicting Protein-Protein Interactions Using Gene Ontology
by: Lun Hu, et al.
Published: (2021-08-01)

Mining disease genes using integrated protein–protein interaction and gene–gene co‐regulation information
by: Jin Li, et al.
Published: (2015-01-01)

InfersentPPI: Prediction of Protein-Protein Interaction Using Protein Sentence Embedding With Gene Ontology Information
by: Meijing Li, et al.
Published: (2022-03-01)

Protein-protein interaction prediction using a hybrid feature representation and a stacked generalization scheme
by: Kuan-Hsi Chen, et al.
Published: (2019-06-01)

A New Method for Recognizing Protein Complexes Based on Protein Interaction Networks and GO Terms
by: Xiaoting Wang, et al.
Published: (2021-12-01)

Identification of protein–protein interaction associated functions based on gene ontology and KEGG pathway
by: Lili Yang, et al.
Published: (2022-09-01)

Computational protein-protein interactions /
by: Nussinov, Ruth
Published: (2009)

Construction and analysis of a comprehensive protein interaction network of HCV with its host Homo sapiens
by: Qurat ul Ain Farooq, et al.
Published: (2019-04-01)

PrOnto Database : GO term functional dissimilarity inferred from biological data.
by: Charles E Chapple, et al.
Published: (2015-06-01)

PPIGCF: A Protein–Protein Interaction-Based Gene Correlation Filter for Optimal Gene Selection
by: Soumen Kumar Pati, et al.
Published: (2023-05-01)

Protein-protein interaction /
by: Werther, Meike, et al.
Published: (2008)

Construction of Complex Features for Computational Predicting ncRNA-Protein Interaction
by: Qiguo Dai, et al.
Published: (2019-02-01)

Infection Strategies of Bacterial and Viral Pathogens through Pathogen-Human Protein-Protein Interactions
by: Saliha eDurmus Tekir, et al.
Published: (2012-02-01)

Protein interaction networks : computational analysis /
by: 443703 Zhang, Aidong
Published: (2009)

Protein-protein interactions : methods and applications /
by: Fu, Haian
Published: (2004)

The Landscape of Virus-Host Protein–Protein Interaction Databases
by: Gabriel Valiente
Published: (2022-07-01)

Wei2GO: weighted sequence similarity-based protein function prediction
by: Maarten J.M.F. Reijnders
Published: (2022-02-01)

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
by: Xiaoshi Zhong, et al.
Published: (2020-12-01)

Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities
by: Pasan C. Fernando, et al.
Published: (2020-10-01)

Gene enrichment analysis and protein–protein interaction network topology delineates S-Phase kinase-associated protein 1 and catenin beta-1 as potential signature genes linked to glioblastoma prognosis
by: K Ashwini, et al.
Published: (2023-01-01)

Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks
by: Surabhi Maheshwari, et al.
Published: (2017-05-01)

Protein-protein interactions : a molecular cloning manual /
by: Golemis, Erica A., et al.
Published: (2005)

Fibrosis Protein-Protein Interactions from Google Matrix Analysis of MetaCore Network
by: Ekaterina Kotelnikova, et al.
Published: (2021-12-01)

Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions
by: Srinivasan Jayashree, et al.
Published: (2019-01-01)

Structure and Protein-Protein Interactions of Ice Nucleation Proteins Drive Their Activity
by: Susan Hartmann, et al.
Published: (2022-06-01)

Prediciting protein-protein interactions from primary structure using support vector machines /
by: Hany Taher Alashwal, et al.
Published: (2004)

Small protein complex prediction algorithm based on protein–protein interaction network segmentation
by: Jiaqing Lyu, et al.
Published: (2022-09-01)

Protein-protein interactions as new drug targets /
by: Klussmann, Enno. editor, et al.
Published: (2008)

Protein-Protein Interaction Analysis by Docking
by: Stephan Ederer, et al.
Published: (2009-03-01)

Proteomics and protein-protein interactions : biology, chemistry, bionformatics, and drug design /
by: Waksman, Gabriel
Published: (2005)

Mass spectrometry analysis for protein-protein interactions and dynamics /
by: Chance, Mark
Published: (2008)

Predicting Functions of Uncharacterized Human Proteins: From Canonical to Proteoforms
by: Ekaterina Poverennaya, et al.
Published: (2020-06-01)

Protein complexes identification based on go attributed network embedding
by: Bo Xu, et al.
Published: (2018-12-01)

Aromatic clusters in protein–protein and protein–drug complexes
by: Esteban Lanzarotti, et al.
Published: (2020-05-01)