Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella)
The Trispot Darter (Etheostoma trisella) is an imperiled small-bodied freshwater fish that inhabits headwaters of the upper Coosa River watershed in Alabama, Georgia, and Tennessee. We sequenced the complete mitochondrial genome of this species to develop non-invasive environmental DNA (eDNA) survei...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1741459 |
| _version_ | 1827772949143224320 |
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| author | Michael W. Sandel Kayla M. Fast Brett Albanese Anakela Popp Parker Nensteil Peter H. Sudmant |
| author_facet | Michael W. Sandel Kayla M. Fast Brett Albanese Anakela Popp Parker Nensteil Peter H. Sudmant |
| author_sort | Michael W. Sandel |
| collection | DOAJ |
| description | The Trispot Darter (Etheostoma trisella) is an imperiled small-bodied freshwater fish that inhabits headwaters of the upper Coosa River watershed in Alabama, Georgia, and Tennessee. We sequenced the complete mitochondrial genome of this species to develop non-invasive environmental DNA (eDNA) surveillance protocols. A mitochondrial phylogenomic analysis reveals the Trispot Darter to have diverged from soon after the common ancestor of genus Etheostoma. The mitochondrial genome sequence of E. trisella is similar to other darter species in terms of GC content and gene order, but the sequence is sufficiently divergent to permit the design of species-specific eDNA primers. |
| first_indexed | 2024-03-11T13:16:01Z |
| format | Article |
| id | doaj.art-ce816628fd6744c1a89e045c3e3610c3 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:16:01Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ce816628fd6744c1a89e045c3e3610c32023-11-03T13:50:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521523152410.1080/23802359.2020.17414591741459Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella)Michael W. Sandel0Kayla M. Fast1Brett Albanese2Anakela Popp3Parker Nensteil4Peter H. Sudmant5The University of West AlabamaThe University of West AlabamaGeorgia Department of Natural Resources, Wildlife Resources Division, Social CircleGeorgia Department of Natural Resources, Wildlife Resources Division, Social CircleGeological Survey of AlabamaUniversity of California BerkeleyThe Trispot Darter (Etheostoma trisella) is an imperiled small-bodied freshwater fish that inhabits headwaters of the upper Coosa River watershed in Alabama, Georgia, and Tennessee. We sequenced the complete mitochondrial genome of this species to develop non-invasive environmental DNA (eDNA) surveillance protocols. A mitochondrial phylogenomic analysis reveals the Trispot Darter to have diverged from soon after the common ancestor of genus Etheostoma. The mitochondrial genome sequence of E. trisella is similar to other darter species in terms of GC content and gene order, but the sequence is sufficiently divergent to permit the design of species-specific eDNA primers.http://dx.doi.org/10.1080/23802359.2020.1741459etheostoma trisellapercidae phylogenymitochondrial genomemitogenome |
| spellingShingle | Michael W. Sandel Kayla M. Fast Brett Albanese Anakela Popp Parker Nensteil Peter H. Sudmant Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) Mitochondrial DNA. Part B. Resources etheostoma trisella percidae phylogeny mitochondrial genome mitogenome |
| title | Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) |
| title_full | Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) |
| title_fullStr | Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) |
| title_full_unstemmed | Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) |
| title_short | Complete mitochondrial genome of the imperiled Trispot Darter (Etheostoma trisella) |
| title_sort | complete mitochondrial genome of the imperiled trispot darter etheostoma trisella |
| topic | etheostoma trisella percidae phylogeny mitochondrial genome mitogenome |
| url | http://dx.doi.org/10.1080/23802359.2020.1741459 |
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