The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea
Camellia japonica L. is an ornamental species due to its beautiful red flowers blooming in winter. Here, we completed the chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea. Its length is 156,971 bp long and has four subregions: 86,673 bp of a lar...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1580164 |
| _version_ | 1797640503790927872 |
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| author | Jongsun Park Yongsung Kim Hong Xi Yu Jin Oh Kyung Man Hahm Jaeyoung Ko |
| author_facet | Jongsun Park Yongsung Kim Hong Xi Yu Jin Oh Kyung Man Hahm Jaeyoung Ko |
| author_sort | Jongsun Park |
| collection | DOAJ |
| description | Camellia japonica L. is an ornamental species due to its beautiful red flowers blooming in winter. Here, we completed the chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea. Its length is 156,971 bp long and has four subregions: 86,673 bp of a large single copy (LSC) and 18,394 bp of small single copy (SSC) regions are separated by 25,952 bp of inverted repeat (IR) regions including 135 genes (91 protein-coding genes, 8 rRNAs, and 36 tRNAs). The overall GC content of this chloroplast genome is 37.3% and those in the LSC, SSC, and IR regions are 35.3%, 30.5%, and 43.0%, respectively. Twenty-five single nucleotide polymorphisms (SNPs) and two insertions and deletions (INDELs) are identified against Korean C. japonica isolated in Jeju island, while 78 SNPs and 643 INDELs are found against Chinese C. japonica. Phylogenetic trees show that Camellia chekiangoleosa is clustered with Korean C. japonica. |
| first_indexed | 2024-03-11T13:32:53Z |
| format | Article |
| id | doaj.art-cfe5617cf7a845458d03dd5b7d74beb9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:53Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-cfe5617cf7a845458d03dd5b7d74beb92023-11-02T16:07:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411038104010.1080/23802359.2019.15801641580164The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in KoreaJongsun Park0Yongsung Kim1Hong Xi2Yu Jin Oh3Kyung Man Hahm4Jaeyoung Ko5InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.Amorepacific R&D UnitDaebong LS Co., Ltd.Amorepacific R&D UnitCamellia japonica L. is an ornamental species due to its beautiful red flowers blooming in winter. Here, we completed the chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea. Its length is 156,971 bp long and has four subregions: 86,673 bp of a large single copy (LSC) and 18,394 bp of small single copy (SSC) regions are separated by 25,952 bp of inverted repeat (IR) regions including 135 genes (91 protein-coding genes, 8 rRNAs, and 36 tRNAs). The overall GC content of this chloroplast genome is 37.3% and those in the LSC, SSC, and IR regions are 35.3%, 30.5%, and 43.0%, respectively. Twenty-five single nucleotide polymorphisms (SNPs) and two insertions and deletions (INDELs) are identified against Korean C. japonica isolated in Jeju island, while 78 SNPs and 643 INDELs are found against Chinese C. japonica. Phylogenetic trees show that Camellia chekiangoleosa is clustered with Korean C. japonica.http://dx.doi.org/10.1080/23802359.2019.1580164camellia japonicachloroplast genomecold hardinesssoyeonpyeongdokorea |
| spellingShingle | Jongsun Park Yongsung Kim Hong Xi Yu Jin Oh Kyung Man Hahm Jaeyoung Ko The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea Mitochondrial DNA. Part B. Resources camellia japonica chloroplast genome cold hardiness soyeonpyeongdo korea |
| title | The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea |
| title_full | The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea |
| title_fullStr | The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea |
| title_full_unstemmed | The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea |
| title_short | The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea |
| title_sort | complete chloroplast genome of common camellia tree camellia japonica l theaceae adapted to cold environment in korea |
| topic | camellia japonica chloroplast genome cold hardiness soyeonpyeongdo korea |
| url | http://dx.doi.org/10.1080/23802359.2019.1580164 |
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