The complete chloroplast genome sequence of Garcinia pedunculata
The first complete chloroplast genome (cpDNA) sequence of Garcinia pedunculata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 157,688 bp in length, contains a large single copy region (LSC) of 85,994 bp and a small single copy region (SSC) of 17,656 bp, which...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1699470 |
| _version_ | 1827773157266685952 |
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| author | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang |
| author_facet | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang |
| author_sort | Dejun Yang |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Garcinia pedunculata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 157,688 bp in length, contains a large single copy region (LSC) of 85,994 bp and a small single copy region (SSC) of 17,656 bp, which were separated by a pair of inverted repeats (IR) regions of 27,017 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.2%, and the corresponding values of the LSC, SSC, and IR regions are 33.6%, 30.2%, and 42.2%, respectively. Further phylogenomic analysis showed that G. pedunculata and Garcinia mangostana clustered in a clade in order Malpighiales. |
| first_indexed | 2024-03-11T13:19:00Z |
| format | Article |
| id | doaj.art-d076bdaade574f8caabc4cd78d214bce |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:00Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d076bdaade574f8caabc4cd78d214bce2023-11-03T11:00:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015122022110.1080/23802359.2019.16994701699470The complete chloroplast genome sequence of Garcinia pedunculataDejun Yang0Qiong Qiu1Linhong Xu2Yumei Xu3Yi Wang4Institute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Garcinia pedunculata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 157,688 bp in length, contains a large single copy region (LSC) of 85,994 bp and a small single copy region (SSC) of 17,656 bp, which were separated by a pair of inverted repeats (IR) regions of 27,017 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.2%, and the corresponding values of the LSC, SSC, and IR regions are 33.6%, 30.2%, and 42.2%, respectively. Further phylogenomic analysis showed that G. pedunculata and Garcinia mangostana clustered in a clade in order Malpighiales.http://dx.doi.org/10.1080/23802359.2019.1699470garcinia pedunculatachloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang The complete chloroplast genome sequence of Garcinia pedunculata Mitochondrial DNA. Part B. Resources garcinia pedunculata chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Garcinia pedunculata |
| title_full | The complete chloroplast genome sequence of Garcinia pedunculata |
| title_fullStr | The complete chloroplast genome sequence of Garcinia pedunculata |
| title_full_unstemmed | The complete chloroplast genome sequence of Garcinia pedunculata |
| title_short | The complete chloroplast genome sequence of Garcinia pedunculata |
| title_sort | complete chloroplast genome sequence of garcinia pedunculata |
| topic | garcinia pedunculata chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1699470 |
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