The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China
Juglans cathayensis var. formosana (Hayata) is a precious Juglans tree endemic to China. In this study, we reported its complete chloroplast genome assembled from Illumina pair-end sequencing data. The completed plastome was 159,967 bp in length, including a large-single copy (LSC) region of 89,320 ...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1750984 |
| _version_ | 1797639248717807616 |
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| author | Qing-guo Ma Yong Huang Xiao-bo Song Ying-ying Chang Dong Pei |
| author_facet | Qing-guo Ma Yong Huang Xiao-bo Song Ying-ying Chang Dong Pei |
| author_sort | Qing-guo Ma |
| collection | DOAJ |
| description | Juglans cathayensis var. formosana (Hayata) is a precious Juglans tree endemic to China. In this study, we reported its complete chloroplast genome assembled from Illumina pair-end sequencing data. The completed plastome was 159,967 bp in length, including a large-single copy (LSC) region of 89,320 bp, a small-single copy (SSC) region of 18,175 bp, and a pair of inverted repeat (IR) regions of 26,236 bp. The overall GC content of the genome was 36.12%, and the corresponding values of the LSC, SSC, and IR regions were 33.71, 29.79, and 42.43%, respectively. A total of 131 genes were annotated, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Phylogenetic analysis strongly supported that J. cathayensis var. formosana and J. cathayensis formed a sister clade to J. mandshurica and J. hopeiensis. The newly characterized complete chloroplast genome of J. cathayensis var. formosana will provide essential data for further investigation of this precious species. |
| first_indexed | 2024-03-11T13:15:06Z |
| format | Article |
| id | doaj.art-d1128547cc724faf8da13b210474ad64 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:15:06Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d1128547cc724faf8da13b210474ad642023-11-03T13:50:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521802180310.1080/23802359.2020.17509841750984The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in ChinaQing-guo Ma0Yong Huang1Xiao-bo Song2Ying-ying Chang3Dong Pei4Research Institute of Forestry, Chinese Academy of ForestryFujian Academy of Forestry SciencesResearch Institute of Forestry, Chinese Academy of ForestryResearch Institute of Forestry, Chinese Academy of ForestryResearch Institute of Forestry, Chinese Academy of ForestryJuglans cathayensis var. formosana (Hayata) is a precious Juglans tree endemic to China. In this study, we reported its complete chloroplast genome assembled from Illumina pair-end sequencing data. The completed plastome was 159,967 bp in length, including a large-single copy (LSC) region of 89,320 bp, a small-single copy (SSC) region of 18,175 bp, and a pair of inverted repeat (IR) regions of 26,236 bp. The overall GC content of the genome was 36.12%, and the corresponding values of the LSC, SSC, and IR regions were 33.71, 29.79, and 42.43%, respectively. A total of 131 genes were annotated, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Phylogenetic analysis strongly supported that J. cathayensis var. formosana and J. cathayensis formed a sister clade to J. mandshurica and J. hopeiensis. The newly characterized complete chloroplast genome of J. cathayensis var. formosana will provide essential data for further investigation of this precious species.http://dx.doi.org/10.1080/23802359.2020.1750984juglans cathayensis var. formosanachloroplast genomesequencingphylogenetic analysis |
| spellingShingle | Qing-guo Ma Yong Huang Xiao-bo Song Ying-ying Chang Dong Pei The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China Mitochondrial DNA. Part B. Resources juglans cathayensis var. formosana chloroplast genome sequencing phylogenetic analysis |
| title | The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China |
| title_full | The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China |
| title_fullStr | The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China |
| title_full_unstemmed | The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China |
| title_short | The complete chloroplast genome of Juglans cathayensis var. formosana (Hayata), an endemic in China |
| title_sort | complete chloroplast genome of juglans cathayensis var formosana hayata an endemic in china |
| topic | juglans cathayensis var. formosana chloroplast genome sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1750984 |
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