Host- and Species-Dependent Quasispecies Divergence of Severe Acute Respiratory Syndrome Coronavirus-2 in Non-human Primate Models

Host- and Species-Dependent Quasispecies Divergence of Severe Acute Respiratory Syndrome Coronavirus-2 in Non-human Primate Models

Recently, newly emerging variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have been continuously reported worldwide. However, the precise evaluation of SARS-CoV-2 microevolution in host is very limited because the exact genetic information of infected virus could not be acqui...

Full description

Bibliographic Details
Main Authors:	Eun-Ha Hwang, Hoyin Chung, Green Kim, Hanseul Oh, You Jung An, Philyong Kang, Choong-min Ryu, Jong-Hwan Park, Jungjoo Hong, Bon-Sang Koo
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2021-07-01
Series:	Frontiers in Microbiology
Subjects:	SARS-CoV-2 non-human primate single nucleotide variant genetic variants single nucleotide polymorphism
Online Access:	https://www.frontiersin.org/articles/10.3389/fmicb.2021.694897/full

Similar Items

Whole genome deep sequencing analysis of viral quasispecies diversity and evolution in HBeAg seroconverters
by: Su-Ru Lin, et al.
Published: (2021-06-01)

SomatoSim: precision simulation of somatic single nucleotide variants
by: Marwan A. Hawari, et al.
Published: (2021-03-01)

Evaluation of Genetic Potential of Iranian Native Chicken Ecotypes; Insights for Conservation
by: Hamed Kharrati-kooppae, et al.
Published: (2022-06-01)

Human ACVR1C missense variants that correlate with altered body fat distribution produce metabolic alterations of graded severity in knock-in mutant mice
by: Pawanrat Tangseefa, et al.
Published: (2024-03-01)

Recurrent miscalling of missense variation from short-read genome sequence data
by: Matthew A. Field, et al.
Published: (2019-07-01)

Association between <i>HOX</i> Transcript Antisense RNA Single-Nucleotide Variants and Recurrent Implantation Failure
by: Jeong Yong Lee, et al.
Published: (2021-03-01)

Phylogeny, molecular evolution, and dating of divergences in Lagerstroemia using plastome sequences
by: Jie Wang, et al.
Published: (2023-04-01)

Loqusdb: added value of an observations database of local genomic variation
by: Måns Magnusson, et al.
Published: (2020-07-01)

Best Practices for Evaluating Single Nucleotide Variant Calling Methods for Microbial Genomics
by: Nathan eOlson, et al.
Published: (2015-07-01)

Prognostic implications of a molecular classifier derived from whole‐exome sequencing in nasopharyngeal carcinoma
by: Hai‐Yun Wang, et al.
Published: (2019-06-01)

PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation
by: Medhat Mahmoud, et al.
Published: (2021-09-01)

Intracranial aneurysm’s association with genetic variants, transcription abnormality, and methylation changes in ADAMTS genes
by: Shi Chen, et al.
Published: (2020-02-01)

The Association of Different Genetic Variants with the Development of Hypoxic–Ischemic Encephalopathy
by: Vesna Pavlov, et al.
Published: (2023-10-01)

<em>RP11-362K2.2:RP11-767I20.1</em> Genetic Variation Is Associated with Post-Reperfusion Therapy Parenchymal Hematoma. A GWAS Meta-Analysis
by: Elena Muiño, et al.
Published: (2021-07-01)

SNV-FEAST: microbial source tracking with single nucleotide variants
by: Leah Briscoe, et al.
Published: (2023-04-01)

Helmsman: fast and efficient mutation signature analysis for massive sequencing datasets
by: Jedidiah Carlson, et al.
Published: (2018-11-01)

Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis
by: Suravajhala P, et al.
Published: (2017-06-01)

Paraoxonase single nucleotide variants show associations with polycystic ovary syndrome: a meta-analysis
by: Anthicha Kunjantarachot, et al.
Published: (2020-11-01)

Effects of FSHR and FSHB Variants on Hormonal Profile and Reproductive Outcomes of Infertile Women With Endometriosis
by: Bianca Bianco, et al.
Published: (2021-09-01)

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data
by: Yan Guo, et al.
Published: (2017-10-01)

Spectrum of low-density lipoprotein receptor (LDLR) mutations in a cohort of Sri Lankan patients with familial hypercholesterolemia – a preliminary report
by: C. S. Paththinige, et al.
Published: (2018-05-01)

Assessing cell-specific effects of genetic variations using tRNA microarrays
by: Christine Polte, et al.
Published: (2019-07-01)

The use of base editing technology to characterize single nucleotide variants
by: Sophia McDaniel, et al.
Published: (2022-01-01)

Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data
by: Fenglin Liu, et al.
Published: (2019-11-01)

Compound hemizygous variants in SERPINA7 gene cause thyroxine‐binding globulin deficiency
by: Yanlan Fang, et al.
Published: (2021-02-01)

Genome sequencing with comprehensive variant calling identifies structural variants and repeat expansions in a large fraction of individuals with ataxia and/or neuromuscular disorders
by: Marlene Ek, et al.
Published: (2023-05-01)

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA
by: Shibing Deng, et al.
Published: (2018-10-01)

ACE2 coding variants in different populations and their potential impact on SARS-CoV-2 binding affinity
by: Fedaa Ali, et al.
Published: (2020-12-01)

Gene variants polymorphisms and uterine leiomyoma: an updated review
by: Sonal Upadhyay, et al.
Published: (2024-03-01)

Functional genetic variants in complement component 7 confer susceptibility to gastric cancer
by: Siyue Wang, et al.
Published: (2022-01-01)

New Insights on Coding Mutations and mRNA Levels of Candidate Genes Associated with Diarrhea Susceptibility in Baladi Goat
by: Mona Al-Sharif, et al.
Published: (2023-01-01)

Facial Skin Microbiome: Aging-Related Changes and Exploratory Functional Associations with Host Genetic Factors, a Pilot Study
by: Edda Russo, et al.
Published: (2023-02-01)

Association of Clinical Aspects and Genetic Variants with the Severity of Cisplatin-Induced Ototoxicity in Head and Neck Squamous Cell Carcinoma: A Prospective Cohort Study
by: Ligia Traldi Macedo, et al.
Published: (2023-03-01)

Colorectal cancer vaccines: in silico identification of tumor-specific antigens associated with frequent HLA-I alleles in the costa rican Central Valley population
by: Diego Morazán-Fernández, et al.
Published: (2022-11-01)

Association of polymorphic variants of genes <i>(HTR2A, MTNR1A, MTNR1B, CLOCK, DRD2)</i> and insomnia in alcohol dependence syndrome
by: I. S. Efremov, et al.
Published: (2021-10-01)

EZH2 Single Nucleotide Variants (SNVs): Diagnostic and Prognostic Role in 10 Solid Tumor Types
by: Elisa Paolicchi, et al.
Published: (2017-11-01)

Array genotyping as diagnostic approach in medical genetics
by: Martina Witsch‐Baumgartner, et al.
Published: (2022-09-01)

Single nucleotide variants of filaggrin and glucocorticoid receptors genes in children suffering different phenotypes of atopic diseases
by: V.O. Dityatkovsky, et al.
Published: (2022-03-01)

Candidate Gene Analysis Reveals Strong Association of CETP Variants With High Density Lipoprotein Cholesterol and PCSK9 Variants With Low Density Lipoprotein Cholesterol in Ghanaian Adults: An AWI-Gen Sub-Study
by: Godfred Agongo, et al.
Published: (2020-10-01)

Identification of single-nucleotide variants associated with susceptibility to Salmonella in pigs using a genome-wide association approach
by: Corinne H. Schut, et al.
Published: (2020-05-01)