Chemical Characterization and Metagenomic Identification of Endophytic Microbiome from South African Sunflower (<i>Helianthus annus</i>) Seeds

<i>Helianthus annus</i> (sunflower) is a globally important oilseed crop whose survival is threatened by various pathogenic diseases. Agrochemical products are used to eradicate these diseases; however, due to their unfriendly environmental consequences, characterizing microorganisms for...

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Main Authors: Fatai Oladunni Balogun, Rukayat Abiola Abdulsalam, Abidemi Oluranti Ojo, Errol Cason, Saheed Sabiu
格式: 文件
语言:English
出版: MDPI AG 2023-04-01
丛编:Microorganisms
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在线阅读:https://www.mdpi.com/2076-2607/11/4/988
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总结:<i>Helianthus annus</i> (sunflower) is a globally important oilseed crop whose survival is threatened by various pathogenic diseases. Agrochemical products are used to eradicate these diseases; however, due to their unfriendly environmental consequences, characterizing microorganisms for exploration as biocontrol agents are considered better alternatives against the use of synthetic chemicals. The study assessed the oil contents of 20 sunflower seed cultivars using FAMEs-chromatography and characterized the endophytic fungi and bacteria microbiome using Illumina sequencing of fungi ITS 1 and bacteria 16S (V3–V4) regions of the rRNA operon. The oil contents ranged between 41–52.8%, and 23 fatty acid components (in varied amounts) were found in all the cultivars, with linoleic (53%) and oleic (28%) acids as the most abundant. Ascomycota (fungi) and Proteobacteria (bacteria) dominated the cultivars at the phyla level, while <i>Alternaria</i> and <i>Bacillus</i> at the genus level in varying abundance. AGSUN 5102 and AGSUN 5101 (AGSUN 5270 for bacteria) had the highest fungi diversity structure, which may have been contributed by the high relative abundance of linoleic acid in the fatty acid components. Dominant fungi genera such as <i>Alternaria</i>, <i>Aspergillus</i>, <i>Aureobasidium</i>, <i>Alternariaste</i>, <i>Cladosporium</i>, <i>Penicillium</i>, and bacteria including <i>Bacillus, Staphylococcus</i>, and <i>Lactobacillus</i> are established, providing insight into the fungi and bacteria community structures from the seeds of South Africa sunflower.
ISSN:2076-2607