The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
Ottelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure incl...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1899860 |
| _version_ | 1797638968468045824 |
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| author | Chaoyong Tu Hao Lin Qiang Wang Lijun Wu Yulian Yang Lijuan Zou Qinggui Wu |
| author_facet | Chaoyong Tu Hao Lin Qiang Wang Lijun Wu Yulian Yang Lijuan Zou Qinggui Wu |
| author_sort | Chaoyong Tu |
| collection | DOAJ |
| description | Ottelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure including a large single-copy region (LSC) of 88,294 bp, a small single-copy region (SSC) of 49,379 bp, and a pair of inverted repeats (IRs) of 10,055 bp each. A total of 128 genes were annotated, including 83 protein-coding genes (PCG), 37 tRNA genes, and 8 rRNA genes. The phylogenetic tree shows that O. acuminate var. crispa has a close relationship with the genus Elodea. The chloroplast genome presented here provides a valuable resource to conserve this endangered species. |
| first_indexed | 2024-03-11T13:11:02Z |
| format | Article |
| id | doaj.art-d194feb308354ada8c1dc46962d1c620 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:02Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d194feb308354ada8c1dc46962d1c6202023-11-03T14:16:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-01631071107210.1080/23802359.2021.18998601899860The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distributionChaoyong Tu0Hao Lin1Qiang Wang2Lijun Wu3Yulian Yang4Lijuan Zou5Qinggui Wu6Ecological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityEcological Security and Protection Key Laboratory of Sichuan Province, College of Life Science and Biotechnology, Mianyang Normal UniversityOttelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure including a large single-copy region (LSC) of 88,294 bp, a small single-copy region (SSC) of 49,379 bp, and a pair of inverted repeats (IRs) of 10,055 bp each. A total of 128 genes were annotated, including 83 protein-coding genes (PCG), 37 tRNA genes, and 8 rRNA genes. The phylogenetic tree shows that O. acuminate var. crispa has a close relationship with the genus Elodea. The chloroplast genome presented here provides a valuable resource to conserve this endangered species.http://dx.doi.org/10.1080/23802359.2021.1899860otteliaplastomeendangered speciesphylogenetic |
| spellingShingle | Chaoyong Tu Hao Lin Qiang Wang Lijun Wu Yulian Yang Lijuan Zou Qinggui Wu The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution Mitochondrial DNA. Part B. Resources ottelia plastome endangered species phylogenetic |
| title | The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution |
| title_full | The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution |
| title_fullStr | The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution |
| title_full_unstemmed | The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution |
| title_short | The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution |
| title_sort | complete chloroplast genome of ottelia acuminate var crispa an endangered aquatic herb with extremely narrow distribution |
| topic | ottelia plastome endangered species phylogenetic |
| url | http://dx.doi.org/10.1080/23802359.2021.1899860 |
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