A Poly(dA:dT) Tract in the <i>IGF1</i> Gene Is a Genetic Marker for Growth Traits in Pigs

Insulin-like growth factor 1 (<i>IGF1</i>) is an important regulator of body growth, development, and metabolism. The poly(dA:dT) tract affects the accessibility of transcription factor binding sites to regulate transcription. Therefore, this study assessed the effects of two poly(dA:dT)...

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Bibliographic Details
Main Authors: Weili Liao, Yifei Wang, Xiwu Qiao, Xiaoke Zhang, Haohui Deng, Caihong Zhang, Jiaqi Li, Xiaolong Yuan, Hao Zhang
Format: Article
Language:English
Published: MDPI AG 2022-11-01
Series:Animals
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Online Access:https://www.mdpi.com/2076-2615/12/23/3316
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Summary:Insulin-like growth factor 1 (<i>IGF1</i>) is an important regulator of body growth, development, and metabolism. The poly(dA:dT) tract affects the accessibility of transcription factor binding sites to regulate transcription. Therefore, this study assessed the effects of two poly(dA:dT) tracts on the transcriptional activity of porcine <i>IGF1</i>. The luciferase assay results demonstrated that the poly(dA:dT) tract 2 (−264/−255) was a positive regulatory element for <i>IGF1</i> gene expression, and the activities between the different lengths of the poly(dA:dT) tract 2 were significant (<inline-formula><math xmlns="http://www.w3.org/1998/Math/MathML" display="inline"><semantics><mrow><mi>p</mi><mo><</mo><mn>0.01</mn></mrow></semantics></math></inline-formula>). The transcription factor <i>C/EBPα</i> inhibited the transcription of <i>IGF1</i> by binding to tract 2, and the expression levels between the lengths of tract 2 after <i>C/EBPα</i> binding were also statistically different (<inline-formula><math xmlns="http://www.w3.org/1998/Math/MathML" display="inline"><semantics><mrow><mi>p</mi><mo><</mo><mn>0.01</mn></mrow></semantics></math></inline-formula>). Only the alleles 10T and 11T were found in the tract 2 in commercial pig breeds, while the 9T, 10T, and 11T alleles were found in Chinese native pig breeds. The allele frequencies were in Hardy–Weinberg equilibrium in all pig breeds. The genotypes of tract 2 were significantly associated with the growth traits (days to 115 kg and average daily gain) (<inline-formula><math xmlns="http://www.w3.org/1998/Math/MathML" display="inline"><semantics><mrow><mi>p</mi><mo><</mo><mn>0.05</mn></mrow></semantics></math></inline-formula>) in commercial pig breeds. Based on these findings, it can be concluded that the tract 2 mutation could be applied as a candidate genetic marker for growth trait selection in pig breeding programs.
ISSN:2076-2615