Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern
We characterized the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern. Its genome size is 161,679 bp in length, containing a large single copy (LSC) of 92,315 bp and a small single copy (SSC) of 21,702 bp separated by a pair of inverted repeat...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1580162 |
| _version_ | 1797640504707383296 |
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| author | Ting Wang Yongfeng Hong Zhen Wang Yingjuan Su |
| author_facet | Ting Wang Yongfeng Hong Zhen Wang Yingjuan Su |
| author_sort | Ting Wang |
| collection | DOAJ |
| description | We characterized the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern. Its genome size is 161,679 bp in length, containing a large single copy (LSC) of 92,315 bp and a small single copy (SSC) of 21,702 bp separated by a pair of inverted repeat regions (IRs) of 23,831 bp. The overall GC contents of the chloroplast genome are 41.4%. A total of 133 genes are annotated, comprising 89 protein-coding genes, 33 tRNA, eight rRNA, and three pseudogenes. ML phylogenetic tree indicates that A. gigantea is sister to A. podophylla. |
| first_indexed | 2024-03-11T13:32:53Z |
| format | Article |
| id | doaj.art-d22193a46c564761a21ff66e43841b9c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:53Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d22193a46c564761a21ff66e43841b9c2023-11-02T16:07:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014196796810.1080/23802359.2019.15801621580162Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fernTing Wang0Yongfeng Hong1Zhen Wang2Yingjuan Su3South China Agricultural UniversitySun Yat-sen UniversitySun Yat-sen UniversitySun Yat-sen UniversityWe characterized the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern. Its genome size is 161,679 bp in length, containing a large single copy (LSC) of 92,315 bp and a small single copy (SSC) of 21,702 bp separated by a pair of inverted repeat regions (IRs) of 23,831 bp. The overall GC contents of the chloroplast genome are 41.4%. A total of 133 genes are annotated, comprising 89 protein-coding genes, 33 tRNA, eight rRNA, and three pseudogenes. ML phylogenetic tree indicates that A. gigantea is sister to A. podophylla.http://dx.doi.org/10.1080/23802359.2019.1580162alsophila giganteaan ornamental and cites giant tree fernchloroplast genomephylogenetic analysis |
| spellingShingle | Ting Wang Yongfeng Hong Zhen Wang Yingjuan Su Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern Mitochondrial DNA. Part B. Resources alsophila gigantea an ornamental and cites giant tree fern chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern |
| title_full | Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern |
| title_fullStr | Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern |
| title_short | Characterization of the complete chloroplast genome of Alsophila gigantea (Cyatheaceae), an ornamental and CITES giant tree fern |
| title_sort | characterization of the complete chloroplast genome of alsophila gigantea cyatheaceae an ornamental and cites giant tree fern |
| topic | alsophila gigantea an ornamental and cites giant tree fern chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1580162 |
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