An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.
The domestication of Indonesian cattle was investigated through a study of their genetic diversity, up to the genome level. Little documentation exists regarding the history of domestication of Indonesian cattle and questions remain despite a growing body of molecular evidence. In this study, we gen...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2020-01-01
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| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0241038 |
| _version_ | 1818835313232969728 |
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| author | Pita Sudrajad Subiharta Subiharta Yudi Adinata Af'idatul Lathifah Jun Heon Lee Johannes A Lenstra Seung Hwan Lee |
| author_facet | Pita Sudrajad Subiharta Subiharta Yudi Adinata Af'idatul Lathifah Jun Heon Lee Johannes A Lenstra Seung Hwan Lee |
| author_sort | Pita Sudrajad |
| collection | DOAJ |
| description | The domestication of Indonesian cattle was investigated through a study of their genetic diversity, up to the genome level. Little documentation exists regarding the history of domestication of Indonesian cattle and questions remain despite a growing body of molecular evidence. In this study, we genotyped seven Indonesian cattle breeds using an Illumina BovineSNP50 Bead Chip to provide insight into their domestication and demographic history in a worldwide population context. Our analyses indicated the presence of hybrid cattle, with Bos javanicus and Bos indicus ancestries being most prevalent, as well as purebred cattle. We revealed that all the breeds were interconnected through several migration events. However, their demographic status varied widely. Although almost all the Indonesian cattle had an effective population size higher than the minimum level required to ensure breed fitness, efforts are still needed to maintain their genetic variability and purity. |
| first_indexed | 2024-12-19T02:48:43Z |
| format | Article |
| id | doaj.art-d350dfebc41a4f27bd5c5f91d4b74077 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-19T02:48:43Z |
| publishDate | 2020-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-d350dfebc41a4f27bd5c5f91d4b740772022-12-21T20:38:46ZengPublic Library of Science (PLoS)PLoS ONE1932-62032020-01-011511e024103810.1371/journal.pone.0241038An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis.Pita SudrajadSubiharta SubihartaYudi AdinataAf'idatul LathifahJun Heon LeeJohannes A LenstraSeung Hwan LeeThe domestication of Indonesian cattle was investigated through a study of their genetic diversity, up to the genome level. Little documentation exists regarding the history of domestication of Indonesian cattle and questions remain despite a growing body of molecular evidence. In this study, we genotyped seven Indonesian cattle breeds using an Illumina BovineSNP50 Bead Chip to provide insight into their domestication and demographic history in a worldwide population context. Our analyses indicated the presence of hybrid cattle, with Bos javanicus and Bos indicus ancestries being most prevalent, as well as purebred cattle. We revealed that all the breeds were interconnected through several migration events. However, their demographic status varied widely. Although almost all the Indonesian cattle had an effective population size higher than the minimum level required to ensure breed fitness, efforts are still needed to maintain their genetic variability and purity.https://doi.org/10.1371/journal.pone.0241038 |
| spellingShingle | Pita Sudrajad Subiharta Subiharta Yudi Adinata Af'idatul Lathifah Jun Heon Lee Johannes A Lenstra Seung Hwan Lee An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. PLoS ONE |
| title | An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. |
| title_full | An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. |
| title_fullStr | An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. |
| title_full_unstemmed | An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. |
| title_short | An insight into the evolutionary history of Indonesian cattle assessed by whole genome data analysis. |
| title_sort | insight into the evolutionary history of indonesian cattle assessed by whole genome data analysis |
| url | https://doi.org/10.1371/journal.pone.0241038 |
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