Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.
The output from whole genome sequencing is a set of contigs, i.e. short non-overlapping DNA sequences (sizes 1-100 kilobasepairs). Piecing the contigs together is an especially difficult task for previously unsequenced DNA, and may not be feasible due to factors such as the lack of sufficient covera...
Main Authors: | Albertas Dvirnas, Christoffer Pichler, Callum L Stewart, Saair Quaderi, Lena K Nyberg, Vilhelm Müller, Santosh Kumar Bikkarolla, Erik Kristiansson, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2018-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC5844556?pdf=render |
Similar Items
-
Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach
by: Albertas Dvirnas, et al.
Published: (2021-01-01) -
Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach.
by: Albertas Dvirnas, et al.
Published: (2021-01-01) -
Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak
by: Santosh K. Bikkarolla, et al.
Published: (2019-08-01) -
Strain-level bacterial typing directly from patient samples using optical DNA mapping
by: My Nyblom, et al.
Published: (2023-02-01) -
Photophysical image analysis: Unsupervised probabilistic thresholding for images from electron-multiplying charge-coupled devices.
by: Jens Krog, et al.
Published: (2024-01-01)