The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
Sonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quad...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2008824 |
| _version_ | 1797638665899343872 |
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| author | Shi-Quan Wang Feiyan Ren |
| author_facet | Shi-Quan Wang Feiyan Ren |
| author_sort | Shi-Quan Wang |
| collection | DOAJ |
| description | Sonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quadripartite structure with a large single copy (LSC) region of 87,238 bp and a small single copy (SSC) region of 18,002 bp, two inverted repeats (IRs) regions of 23,906 bp each. The overall GC content was 37.3%, respectively. We detected 128 genes in cp genome, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that S. ovata has a close relationship with S. apetala within the genus Sonneratia. |
| first_indexed | 2024-03-11T13:06:56Z |
| format | Article |
| id | doaj.art-d453a11c043b4f84841c7b7931d00d0c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:56Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d453a11c043b4f84841c7b7931d00d0c2023-11-03T14:36:00ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-017122622710.1080/23802359.2021.20088242008824The chloroplast genome of Sonneratia ovata: genome structure and comparative analysisShi-Quan Wang0Feiyan Ren1Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal UniversityMinistry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal UniversitySonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quadripartite structure with a large single copy (LSC) region of 87,238 bp and a small single copy (SSC) region of 18,002 bp, two inverted repeats (IRs) regions of 23,906 bp each. The overall GC content was 37.3%, respectively. We detected 128 genes in cp genome, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that S. ovata has a close relationship with S. apetala within the genus Sonneratia.http://dx.doi.org/10.1080/23802359.2021.2008824sonneratia ovatachloroplastphylogenetic analysisillumina |
| spellingShingle | Shi-Quan Wang Feiyan Ren The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis Mitochondrial DNA. Part B. Resources sonneratia ovata chloroplast phylogenetic analysis illumina |
| title | The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis |
| title_full | The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis |
| title_fullStr | The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis |
| title_full_unstemmed | The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis |
| title_short | The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis |
| title_sort | chloroplast genome of sonneratia ovata genome structure and comparative analysis |
| topic | sonneratia ovata chloroplast phylogenetic analysis illumina |
| url | http://dx.doi.org/10.1080/23802359.2021.2008824 |
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