The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration
Asian palm civet (Paradoxurus hermaphroditus) is one of the smallest palm civet which is least studied. Here, we report the first complete mitochondrial (mt) genome of Asian palm civet (P. hermaphroditus). The circular mt genome with a length of 16,706 bp contained 1 control region, 2 rRNAs, 13 prot...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1443853 |
| _version_ | 1827774321235329024 |
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| author | Vaishnavi Kunteepuram Ara Sreenivas Wajeeda Tabasum Anil K. Challagandla Ajay Gaur |
| author_facet | Vaishnavi Kunteepuram Ara Sreenivas Wajeeda Tabasum Anil K. Challagandla Ajay Gaur |
| author_sort | Vaishnavi Kunteepuram |
| collection | DOAJ |
| description | Asian palm civet (Paradoxurus hermaphroditus) is one of the smallest palm civet which is least studied. Here, we report the first complete mitochondrial (mt) genome of Asian palm civet (P. hermaphroditus). The circular mt genome with a length of 16,706 bp contained 1 control region, 2 rRNAs, 13 protein-coding genes, and 22 tRNAs. Overall base composition of the complete mt DNA was 33.7% A, 30.5% T, 22.9% C, and 12.9% G. All the genes in mt genome of Asian palm civet (P. hermaphroditus) were distributed on the H-strand, except ND6 and eight tRNA genes encoded on the L-strand. Maximum likelihood (ML) and Bayesian inference (BI) methods were used to infer the phylogenetic relationship of P. hermaphroditus. The phylogenetic analysis shows that all species from the family Viverridae cluster together, in which P. hermaphroditus exhibits the closest relationship with P. larvata. |
| first_indexed | 2024-03-11T13:35:48Z |
| format | Article |
| id | doaj.art-d6a8742263a3402dab33325b34a79987 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:48Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d6a8742263a3402dab33325b34a799872023-11-02T15:57:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013129429510.1080/23802359.2018.14438531443853The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic considerationVaishnavi Kunteepuram0Ara Sreenivas1Wajeeda Tabasum2Anil K. Challagandla3Ajay Gaur4CSIR – Centre for Cellular and Molecular Biology (CCMB)CSIR – Centre for Cellular and Molecular Biology (CCMB)CSIR – Centre for Cellular and Molecular Biology (CCMB)CSIR – Centre for Cellular and Molecular Biology (CCMB)CSIR – Centre for Cellular and Molecular Biology (CCMB)Asian palm civet (Paradoxurus hermaphroditus) is one of the smallest palm civet which is least studied. Here, we report the first complete mitochondrial (mt) genome of Asian palm civet (P. hermaphroditus). The circular mt genome with a length of 16,706 bp contained 1 control region, 2 rRNAs, 13 protein-coding genes, and 22 tRNAs. Overall base composition of the complete mt DNA was 33.7% A, 30.5% T, 22.9% C, and 12.9% G. All the genes in mt genome of Asian palm civet (P. hermaphroditus) were distributed on the H-strand, except ND6 and eight tRNA genes encoded on the L-strand. Maximum likelihood (ML) and Bayesian inference (BI) methods were used to infer the phylogenetic relationship of P. hermaphroditus. The phylogenetic analysis shows that all species from the family Viverridae cluster together, in which P. hermaphroditus exhibits the closest relationship with P. larvata.http://dx.doi.org/10.1080/23802359.2018.1443853paradoxurus hermaphroditusasian palm civetmitochondrial genomephylogenyconservation |
| spellingShingle | Vaishnavi Kunteepuram Ara Sreenivas Wajeeda Tabasum Anil K. Challagandla Ajay Gaur The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration Mitochondrial DNA. Part B. Resources paradoxurus hermaphroditus asian palm civet mitochondrial genome phylogeny conservation |
| title | The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration |
| title_full | The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration |
| title_fullStr | The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration |
| title_full_unstemmed | The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration |
| title_short | The complete mitochondrial genome of Asian palm civet (Paradoxurus hermaphroditus) with phylogenetic consideration |
| title_sort | complete mitochondrial genome of asian palm civet paradoxurus hermaphroditus with phylogenetic consideration |
| topic | paradoxurus hermaphroditus asian palm civet mitochondrial genome phylogeny conservation |
| url | http://dx.doi.org/10.1080/23802359.2018.1443853 |
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