Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface
We present a database client software – Neurovascular Network Explorer 1.0 (NNE 1.0) – that uses MATLAB® based Graphical User Interface (GUI) for interaction with a database of 2-photon single-vessel diameter measurements from our previous publication [1]. These data are of particular interest for m...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2014-05-01
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| Series: | Frontiers in Neuroinformatics |
| Subjects: | |
| Online Access: | http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00056/full |
| _version_ | 1819107625700163584 |
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| author | Vishnu B Sridhar Peifang eTian Peifang eTian Anders M Dale Anna eDevor Anna eDevor Payam A Saisan |
| author_facet | Vishnu B Sridhar Peifang eTian Peifang eTian Anders M Dale Anna eDevor Anna eDevor Payam A Saisan |
| author_sort | Vishnu B Sridhar |
| collection | DOAJ |
| description | We present a database client software – Neurovascular Network Explorer 1.0 (NNE 1.0) – that uses MATLAB® based Graphical User Interface (GUI) for interaction with a database of 2-photon single-vessel diameter measurements from our previous publication [1]. These data are of particular interest for modeling the hemodynamic response. NNE 1.0 is downloaded by the user and then runs either as a MATLAB script or as a standalone program on a Windows platform. The GUI allows browsing the database according to parameters specified by the user, simple manipulation and visualization of the retrieved records (such as averaging and peak-normalization), and export of the results. Further, we provide NNE 1.0 source code. With this source code, the user can database their own experimental results, given the appropriate data structure and naming conventions, and thus share their data in a user-friendly format with other investigators. NNE 1.0 provides an example of seamless and low-cost solution for sharing of experimental data by a regular size neuroscience laboratory and may serve as a general template, facilitating dissemination of biological results and accelerating data-driven modeling approaches. |
| first_indexed | 2024-12-22T02:57:01Z |
| format | Article |
| id | doaj.art-d7d71cee3b5b4b1f82935f41d9163640 |
| institution | Directory Open Access Journal |
| issn | 1662-5196 |
| language | English |
| last_indexed | 2024-12-22T02:57:01Z |
| publishDate | 2014-05-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Neuroinformatics |
| spelling | doaj.art-d7d71cee3b5b4b1f82935f41d91636402022-12-21T18:41:15ZengFrontiers Media S.A.Frontiers in Neuroinformatics1662-51962014-05-01810.3389/fninf.2014.0005685928Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interfaceVishnu B Sridhar0Peifang eTian1Peifang eTian2Anders M Dale3Anna eDevor4Anna eDevor5Payam A Saisan6University of California San DiegoJohn Carroll UniversityUniversity of California San DiegoUniversity of California San DiegoUniversity of California San DiegoMassachusetts General Hospital, Harvard Medical SchoolUniversity of California San DiegoWe present a database client software – Neurovascular Network Explorer 1.0 (NNE 1.0) – that uses MATLAB® based Graphical User Interface (GUI) for interaction with a database of 2-photon single-vessel diameter measurements from our previous publication [1]. These data are of particular interest for modeling the hemodynamic response. NNE 1.0 is downloaded by the user and then runs either as a MATLAB script or as a standalone program on a Windows platform. The GUI allows browsing the database according to parameters specified by the user, simple manipulation and visualization of the retrieved records (such as averaging and peak-normalization), and export of the results. Further, we provide NNE 1.0 source code. With this source code, the user can database their own experimental results, given the appropriate data structure and naming conventions, and thus share their data in a user-friendly format with other investigators. NNE 1.0 provides an example of seamless and low-cost solution for sharing of experimental data by a regular size neuroscience laboratory and may serve as a general template, facilitating dissemination of biological results and accelerating data-driven modeling approaches.http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00056/fullCerebral CortexdatabaseMATLAB2-photon microscopyarterioledilation |
| spellingShingle | Vishnu B Sridhar Peifang eTian Peifang eTian Anders M Dale Anna eDevor Anna eDevor Payam A Saisan Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface Frontiers in Neuroinformatics Cerebral Cortex database MATLAB 2-photon microscopy arteriole dilation |
| title | Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface |
| title_full | Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface |
| title_fullStr | Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface |
| title_full_unstemmed | Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface |
| title_short | Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface |
| title_sort | neurovascular network explorer 1 0 a database of 2 photon single vessel diameter measurements with matlab 174 graphical user interface |
| topic | Cerebral Cortex database MATLAB 2-photon microscopy arteriole dilation |
| url | http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00056/full |
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