Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae)
Complete mitochondrial genome (mitogenome) sequences can provide useful and varied information for evolutionary and phylogenetic studies. We report the first complete mitogenome sequence of the bumblebee shrimp (<i>Gnathophyllum americanum</i>). The mitogenome is 15,842 bp in length and...
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MDPI AG
2023-05-01
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| Series: | Fishes |
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| Online Access: | https://www.mdpi.com/2410-3888/8/5/238 |
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| author | Chia-Hsuan Sung Chen-Cheng Cheng Chang-Wen Huang Liang-Jong Wang |
| author_facet | Chia-Hsuan Sung Chen-Cheng Cheng Chang-Wen Huang Liang-Jong Wang |
| author_sort | Chia-Hsuan Sung |
| collection | DOAJ |
| description | Complete mitochondrial genome (mitogenome) sequences can provide useful and varied information for evolutionary and phylogenetic studies. We report the first complete mitogenome sequence of the bumblebee shrimp (<i>Gnathophyllum americanum</i>). The mitogenome is 15,842 bp in length and contains 13 protein-encoding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The nucleotide composition of the mitogenome was as follows: A,36.72%; T,29.62%; C,21.0%; and G,12.66%. The most common start and stop codons are ATG and TAA, respectively. The MGO (mitochondrial gene order) of <i>G. americanum</i> and <i>Hymenocera picta</i> is unique in Decapoda. Both the phylogeny based on mitochondrial genomic DNA data and the unique MGO pattern indicate that the genus <i>Gnathophyllum</i> might be a sister genus to the genus <i>Hymenocera</i>. The mitogenomic sequence data obtained in this study will provide more information on <i>G. americanum</i> for species identification, population genetics, and biogeography. |
| first_indexed | 2024-03-11T03:45:09Z |
| format | Article |
| id | doaj.art-d82b8ccaddff4d52a1d0f9e16e01492a |
| institution | Directory Open Access Journal |
| issn | 2410-3888 |
| language | English |
| last_indexed | 2024-03-11T03:45:09Z |
| publishDate | 2023-05-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Fishes |
| spelling | doaj.art-d82b8ccaddff4d52a1d0f9e16e01492a2023-11-18T01:19:40ZengMDPI AGFishes2410-38882023-05-018523810.3390/fishes8050238Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae)Chia-Hsuan Sung0Chen-Cheng Cheng1Chang-Wen Huang2Liang-Jong Wang3Planning and Information Division, Fisheries Research Institute, Keelung 202008, TaiwanPenghu Marine Biology Research Center, Fisheries Research Institute, Penghu 880033, TaiwanDepartment of Aquaculture, National Taiwan Ocean University, Keelung 202301, TaiwanForest Protection Division, Taiwan Forestry Research Institute, Taipei 100051, TaiwanComplete mitochondrial genome (mitogenome) sequences can provide useful and varied information for evolutionary and phylogenetic studies. We report the first complete mitogenome sequence of the bumblebee shrimp (<i>Gnathophyllum americanum</i>). The mitogenome is 15,842 bp in length and contains 13 protein-encoding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The nucleotide composition of the mitogenome was as follows: A,36.72%; T,29.62%; C,21.0%; and G,12.66%. The most common start and stop codons are ATG and TAA, respectively. The MGO (mitochondrial gene order) of <i>G. americanum</i> and <i>Hymenocera picta</i> is unique in Decapoda. Both the phylogeny based on mitochondrial genomic DNA data and the unique MGO pattern indicate that the genus <i>Gnathophyllum</i> might be a sister genus to the genus <i>Hymenocera</i>. The mitogenomic sequence data obtained in this study will provide more information on <i>G. americanum</i> for species identification, population genetics, and biogeography.https://www.mdpi.com/2410-3888/8/5/238caridean shrimpmolecular phylogenyrelative synonymous codon usagegene order rearrangement |
| spellingShingle | Chia-Hsuan Sung Chen-Cheng Cheng Chang-Wen Huang Liang-Jong Wang Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) Fishes caridean shrimp molecular phylogeny relative synonymous codon usage gene order rearrangement |
| title | Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) |
| title_full | Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) |
| title_fullStr | Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) |
| title_full_unstemmed | Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) |
| title_short | Characterization and Phylogenetic Analysis of the First Complete Mitochondrial Genome of <i>Gnathophyllum americanum</i> (Guérin-Méneville, 1855) (Malacostraca: Decapoda: Palaemonidae) |
| title_sort | characterization and phylogenetic analysis of the first complete mitochondrial genome of i gnathophyllum americanum i guerin meneville 1855 malacostraca decapoda palaemonidae |
| topic | caridean shrimp molecular phylogeny relative synonymous codon usage gene order rearrangement |
| url | https://www.mdpi.com/2410-3888/8/5/238 |
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