The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 ...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1491347 |
| _version_ | 1797640643274604544 |
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| author | Shicheng Cai Xiang Cai Shufeng Li Shanshan Liu Zhen Wang Ting Wang Yingjuan Su |
| author_facet | Shicheng Cai Xiang Cai Shufeng Li Shanshan Liu Zhen Wang Ting Wang Yingjuan Su |
| author_sort | Shicheng Cai |
| collection | DOAJ |
| description | Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 bp) regions separated by a pair of inverted repeats (IR, 26,986 bp). A total of 132 genes were identified, including 88 protein coding genes, 35 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood phylogenetic tree revealed that P. bonii was most closely related to Lepisorus clathratus. The study will greatly facilitate the chloroplast phylogenomics of Polypodiaceae. |
| first_indexed | 2024-03-11T13:34:48Z |
| format | Article |
| id | doaj.art-d866dd9499ec40019df14ec49cb5fa47 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:48Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d866dd9499ec40019df14ec49cb5fa472023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013280180210.1080/23802359.2018.14913471491347The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fernShicheng Cai0Xiang Cai1Shufeng Li2Shanshan Liu3Zhen Wang4Ting Wang5Yingjuan Su6Sun Yat-sen UniversitySun Yat-sen UniversitySun Yat-sen UniversitySun Yat-sen UniversityNanjing Agricultural UniversitySouth China Agricultural UniversitySun Yat-sen UniversityPyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 bp) regions separated by a pair of inverted repeats (IR, 26,986 bp). A total of 132 genes were identified, including 88 protein coding genes, 35 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood phylogenetic tree revealed that P. bonii was most closely related to Lepisorus clathratus. The study will greatly facilitate the chloroplast phylogenomics of Polypodiaceae.http://dx.doi.org/10.1080/23802359.2018.1491347pyrrosia boniichloroplast genomeornamental and medical fernphylogenetic analysis |
| spellingShingle | Shicheng Cai Xiang Cai Shufeng Li Shanshan Liu Zhen Wang Ting Wang Yingjuan Su The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern Mitochondrial DNA. Part B. Resources pyrrosia bonii chloroplast genome ornamental and medical fern phylogenetic analysis |
| title | The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern |
| title_full | The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern |
| title_fullStr | The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern |
| title_full_unstemmed | The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern |
| title_short | The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern |
| title_sort | complete chloroplast genome of pyrrosia bonii polypodiaceae an important ornamental and medical fern |
| topic | pyrrosia bonii chloroplast genome ornamental and medical fern phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1491347 |
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