transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

Abstract Background RNA-seq followed by de novo transcriptome assembly has been a transformative technique in biological research of non-model organisms, but the computational processing of RNA-seq data entails many different software tools. The complexity of these de novo transcriptomics workflows...

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Bibliographic Details
Main Authors: Timothy R. Fallon, Tereza Čalounová, Martin Mokrejš, Jing-Ke Weng, Tomáš Pluskal
Format: Article
Language:English
Published: BMC 2023-04-01
Series:BMC Bioinformatics
Subjects:
De novo transcriptome assembly
RNA-seq
Non-model organisms
Transcriptome annotation
Differential expression analysis
Reproducible software
Online Access:https://doi.org/10.1186/s12859-023-05254-8

Internet

https://doi.org/10.1186/s12859-023-05254-8

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