transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

Abstract Background RNA-seq followed by de novo transcriptome assembly has been a transformative technique in biological research of non-model organisms, but the computational processing of RNA-seq data entails many different software tools. The complexity of these de novo transcriptomics workflows...

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Bibliographic Details
Main Authors:	Timothy R. Fallon, Tereza Čalounová, Martin Mokrejš, Jing-Ke Weng, Tomáš Pluskal
Format:	Article
Language:	English
Published:	BMC 2023-04-01
Series:	BMC Bioinformatics
Subjects:	De novo transcriptome assembly RNA-seq Non-model organisms Transcriptome annotation Differential expression analysis Reproducible software
Online Access:	https://doi.org/10.1186/s12859-023-05254-8

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