Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae)
Actinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and perf...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-03-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2054382 |
| _version_ | 1797638668119179264 |
|---|---|
| author | Zimeng Chen Li He Song Weicai Wenbo Shi Qin Gong Chao Shi |
| author_facet | Zimeng Chen Li He Song Weicai Wenbo Shi Qin Gong Chao Shi |
| author_sort | Zimeng Chen |
| collection | DOAJ |
| description | Actinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and performed a phylogenetic analysis. The complete chloroplast genome of A. lecomtei was 152,863 bp in length which contains a large single-copy (LSC) region of 93,763 bp, a small single-copy (SSC) region of 18,814 bp, and two inverted repeat (IR) regions of 20,143 bp. The analysis identified 128 genes, comprised of 84 protein-coding genes, 36 tRNAs, and eight rRNAs. The GC content of A. lecomtei complete chloroplast genome was 39.1%. The phylogenetic analysis result demonstrated that A. lecomtei was closely related to A. obovate. |
| first_indexed | 2024-03-11T13:05:57Z |
| format | Article |
| id | doaj.art-d99d70eaf4584e1ba550f16b7d45bfb5 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:57Z |
| publishDate | 2022-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-d99d70eaf4584e1ba550f16b7d45bfb52023-11-03T14:36:02ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-03-017354854910.1080/23802359.2022.20543822054382Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae)Zimeng Chen0Li He1Song Weicai2Wenbo Shi3Qin Gong4Chao Shi5College of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyCollege of Art, Qingdao University of Science and TechnologyCollege of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyCollege of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyCollege of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyCollege of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyActinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and performed a phylogenetic analysis. The complete chloroplast genome of A. lecomtei was 152,863 bp in length which contains a large single-copy (LSC) region of 93,763 bp, a small single-copy (SSC) region of 18,814 bp, and two inverted repeat (IR) regions of 20,143 bp. The analysis identified 128 genes, comprised of 84 protein-coding genes, 36 tRNAs, and eight rRNAs. The GC content of A. lecomtei complete chloroplast genome was 39.1%. The phylogenetic analysis result demonstrated that A. lecomtei was closely related to A. obovate.http://dx.doi.org/10.1080/23802359.2022.2054382actinodaphne lecomteilauraceaechloroplast genomephylogenetic relationships |
| spellingShingle | Zimeng Chen Li He Song Weicai Wenbo Shi Qin Gong Chao Shi Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) Mitochondrial DNA. Part B. Resources actinodaphne lecomtei lauraceae chloroplast genome phylogenetic relationships |
| title | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
| title_full | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
| title_fullStr | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
| title_full_unstemmed | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
| title_short | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
| title_sort | complete chloroplast genome sequence and annotation of actinodaphne lecomtei c k allen 1938 lauraceae |
| topic | actinodaphne lecomtei lauraceae chloroplast genome phylogenetic relationships |
| url | http://dx.doi.org/10.1080/23802359.2022.2054382 |
| work_keys_str_mv | AT zimengchen completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT lihe completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT songweicai completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT wenboshi completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT qingong completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT chaoshi completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae |