FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca
FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for suppo...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2016-03-01
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| Series: | Frontiers in Plant Science |
| Subjects: | |
| Online Access: | http://journal.frontiersin.org/Journal/10.3389/fpls.2016.00242/full |
| _version_ | 1811232625974575104 |
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| author | Sushma eNaithani Christina Mae Partipilo Rajani eRaja Justin Lee Elser Pankaj eJaiswal |
| author_facet | Sushma eNaithani Christina Mae Partipilo Rajani eRaja Justin Lee Elser Pankaj eJaiswal |
| author_sort | Sushma eNaithani |
| collection | DOAJ |
| description | FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition of new pathways, enzymes, reactions, compounds, and small molecules in the database. To date, FragariaCyc comprises 66 super-pathways, 488 unique pathways, 2,348 metabolic reactions, 3,507 enzymes, and 2,134 compounds. In addition to searching and browsing FragariaCyc, researchers can compare pathways across various plant metabolic networks and analyze their data using Omics Viewer tool. We view FragariaCyc as a resource for the community of researchers working with strawberry and related fruit crops. It can help understanding the regulation of overall metabolism of the strawberry plant during development and in response to diseases and abiotic stresses. FragariaCyc is available online at http://pathways.cgrb.oregonstate.edu. |
| first_indexed | 2024-04-12T11:06:03Z |
| format | Article |
| id | doaj.art-d9f7f22cc1e84748961cf9764f1efca4 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-04-12T11:06:03Z |
| publishDate | 2016-03-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-d9f7f22cc1e84748961cf9764f1efca42022-12-22T03:35:48ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2016-03-01710.3389/fpls.2016.00242165681FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vescaSushma eNaithani0Christina Mae Partipilo1Rajani eRaja2Justin Lee Elser3Pankaj eJaiswal4Oregon State UniversityOregon State UniversityOregon State UniversityOregon State UniversityOregon State UniversityFragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition of new pathways, enzymes, reactions, compounds, and small molecules in the database. To date, FragariaCyc comprises 66 super-pathways, 488 unique pathways, 2,348 metabolic reactions, 3,507 enzymes, and 2,134 compounds. In addition to searching and browsing FragariaCyc, researchers can compare pathways across various plant metabolic networks and analyze their data using Omics Viewer tool. We view FragariaCyc as a resource for the community of researchers working with strawberry and related fruit crops. It can help understanding the regulation of overall metabolism of the strawberry plant during development and in response to diseases and abiotic stresses. FragariaCyc is available online at http://pathways.cgrb.oregonstate.edu.http://journal.frontiersin.org/Journal/10.3389/fpls.2016.00242/fullstrawberryFragaria vescaGene-expression analysisFragariaCyc databasePlant metabolic pathways |
| spellingShingle | Sushma eNaithani Christina Mae Partipilo Rajani eRaja Justin Lee Elser Pankaj eJaiswal FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca Frontiers in Plant Science strawberry Fragaria vesca Gene-expression analysis FragariaCyc database Plant metabolic pathways |
| title | FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca |
| title_full | FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca |
| title_fullStr | FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca |
| title_full_unstemmed | FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca |
| title_short | FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca |
| title_sort | fragariacyc a metabolic pathway database for woodland strawberry fragaria vesca |
| topic | strawberry Fragaria vesca Gene-expression analysis FragariaCyc database Plant metabolic pathways |
| url | http://journal.frontiersin.org/Journal/10.3389/fpls.2016.00242/full |
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