Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis)
The Myo-Inositol-1-phosphate synthase (MIPS) gene family is involved in the myo-inositol synthesis and plays a significant role in signal transduction, membrane biogenesis, oligosaccharides synthesis, auxin storage and transport, programmed cell death and abiotic stress tolerance in plants. This stu...
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| Format: | Article |
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Frontiers Media S.A.
2022-11-01
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| Series: | Frontiers in Plant Science |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2022.1021297/full |
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| author | Himanshi Gangwar Himanshi Gangwar Priya Kumari Priya Kumari Vijay Gahlaut Vijay Gahlaut Sanjay Kumar Sanjay Kumar Vandana Jaiswal Vandana Jaiswal |
| author_facet | Himanshi Gangwar Himanshi Gangwar Priya Kumari Priya Kumari Vijay Gahlaut Vijay Gahlaut Sanjay Kumar Sanjay Kumar Vandana Jaiswal Vandana Jaiswal |
| author_sort | Himanshi Gangwar |
| collection | DOAJ |
| description | The Myo-Inositol-1-phosphate synthase (MIPS) gene family is involved in the myo-inositol synthesis and plays a significant role in signal transduction, membrane biogenesis, oligosaccharides synthesis, auxin storage and transport, programmed cell death and abiotic stress tolerance in plants. This study comprehensively identified the MIPS genes in Rosaceae plant species, and 51 MIPS genes were identified from 26 Rosaceae species. The phylogenetic analysis divided the MIPSs into two clades (clade I; subfamily Amygdaloideae specific, and clade II; subfamily Rosoideae specific). MIPS genes of all 26 Rosaceae species consist of similar gene structure, motif and domain composition, which shows their conserved nature. The cis-regulatory elements (CREs) analysis revealed that most Rosaceae MIPS genes play a role in growth, development, and stress responses. Furthermore, the qRT-PCR analysis also revealed the involvement of RcMIPS gene in plant development and response to abiotic stresses, including drought and heat. The results of the present study contribute to the understanding of the biological function of Rosaceae MIPS genes, and that could be used in further functional validations. |
| first_indexed | 2024-04-12T14:11:26Z |
| format | Article |
| id | doaj.art-daec1b4c5034427c849aa7df3089aa04 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-04-12T14:11:26Z |
| publishDate | 2022-11-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-daec1b4c5034427c849aa7df3089aa042022-12-22T03:29:52ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2022-11-011310.3389/fpls.2022.10212971021297Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis)Himanshi Gangwar0Himanshi Gangwar1Priya Kumari2Priya Kumari3Vijay Gahlaut4Vijay Gahlaut5Sanjay Kumar6Sanjay Kumar7Vandana Jaiswal8Vandana Jaiswal9Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, IndiaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, IndiaBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, IndiaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, IndiaBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, IndiaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, IndiaBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, IndiaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, IndiaBiotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, IndiaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, IndiaThe Myo-Inositol-1-phosphate synthase (MIPS) gene family is involved in the myo-inositol synthesis and plays a significant role in signal transduction, membrane biogenesis, oligosaccharides synthesis, auxin storage and transport, programmed cell death and abiotic stress tolerance in plants. This study comprehensively identified the MIPS genes in Rosaceae plant species, and 51 MIPS genes were identified from 26 Rosaceae species. The phylogenetic analysis divided the MIPSs into two clades (clade I; subfamily Amygdaloideae specific, and clade II; subfamily Rosoideae specific). MIPS genes of all 26 Rosaceae species consist of similar gene structure, motif and domain composition, which shows their conserved nature. The cis-regulatory elements (CREs) analysis revealed that most Rosaceae MIPS genes play a role in growth, development, and stress responses. Furthermore, the qRT-PCR analysis also revealed the involvement of RcMIPS gene in plant development and response to abiotic stresses, including drought and heat. The results of the present study contribute to the understanding of the biological function of Rosaceae MIPS genes, and that could be used in further functional validations.https://www.frontiersin.org/articles/10.3389/fpls.2022.1021297/fullmyo-inositol 1-phosphate synthasephylogenetic analysisgene structurecis-elementsdrought stress |
| spellingShingle | Himanshi Gangwar Himanshi Gangwar Priya Kumari Priya Kumari Vijay Gahlaut Vijay Gahlaut Sanjay Kumar Sanjay Kumar Vandana Jaiswal Vandana Jaiswal Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) Frontiers in Plant Science myo-inositol 1-phosphate synthase phylogenetic analysis gene structure cis-elements drought stress |
| title | Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) |
| title_full | Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) |
| title_fullStr | Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) |
| title_full_unstemmed | Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) |
| title_short | Identification and comprehensive analysis of MIPSs in Rosaceae and their expression under abiotic stresses in rose (Rosa chinensis) |
| title_sort | identification and comprehensive analysis of mipss in rosaceae and their expression under abiotic stresses in rose rosa chinensis |
| topic | myo-inositol 1-phosphate synthase phylogenetic analysis gene structure cis-elements drought stress |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2022.1021297/full |
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