The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China
Liupao tea is one of the well-known Chinese tea brands and a famous local specialty in Wuzhou, Guangxi, China. However, the genetic background and phylogenetic relationship of the native resource plants of Liupao tea need study, especially at the genomic level. In this study, we reported the complet...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-08-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2250072 |
| _version_ | 1827772125881040896 |
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| author | Yan-Ni Liang Hong Li Xi-Yang Huang Yue-Jing Bin Yu-Mei Zhen Xin-Mei Qin |
| author_facet | Yan-Ni Liang Hong Li Xi-Yang Huang Yue-Jing Bin Yu-Mei Zhen Xin-Mei Qin |
| author_sort | Yan-Ni Liang |
| collection | DOAJ |
| description | Liupao tea is one of the well-known Chinese tea brands and a famous local specialty in Wuzhou, Guangxi, China. However, the genetic background and phylogenetic relationship of the native resource plants of Liupao tea need study, especially at the genomic level. In this study, we reported the complete chloroplast (cp) genome sequence of Camellia sinensis var. sinensis cultivar ‘Liupao’ (LP, Liupao tea population) and inferred its phylogenetic relationship to other tea plant variants or cultivars. The cp genome had a total length of 157,097 bp and the overall GC content was 37.3%. The cp genome contained one LSC region (86,641 bp) and one SSC region (18,276 bp), which were separated by two IR regions (26,090 bp, respectively). Moreover, the cp genomes were composed of 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The phylogenetic analysis showed that LP was closely related to C. sinensis var. pabilimba cv. ‘Lingyunbaihao’. This study will provide useful information for further investigating the genetic background, evolution, and breeding of LP as well as other tea cultivars and varieties. |
| first_indexed | 2024-03-11T13:03:51Z |
| format | Article |
| id | doaj.art-db28ded78b4c4321b25345bf8914e36e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:03:51Z |
| publishDate | 2023-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-db28ded78b4c4321b25345bf8914e36e2023-11-03T14:44:08ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-08-018892192610.1080/23802359.2023.22500722250072The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, ChinaYan-Ni Liang0Hong Li1Xi-Yang Huang2Yue-Jing Bin3Yu-Mei Zhen4Xin-Mei Qin5Modern Industry College of Liupao Tea, Wuzhou UniversityGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesModern Industry College of Liupao Tea, Wuzhou UniversityGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesLiupao tea is one of the well-known Chinese tea brands and a famous local specialty in Wuzhou, Guangxi, China. However, the genetic background and phylogenetic relationship of the native resource plants of Liupao tea need study, especially at the genomic level. In this study, we reported the complete chloroplast (cp) genome sequence of Camellia sinensis var. sinensis cultivar ‘Liupao’ (LP, Liupao tea population) and inferred its phylogenetic relationship to other tea plant variants or cultivars. The cp genome had a total length of 157,097 bp and the overall GC content was 37.3%. The cp genome contained one LSC region (86,641 bp) and one SSC region (18,276 bp), which were separated by two IR regions (26,090 bp, respectively). Moreover, the cp genomes were composed of 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The phylogenetic analysis showed that LP was closely related to C. sinensis var. pabilimba cv. ‘Lingyunbaihao’. This study will provide useful information for further investigating the genetic background, evolution, and breeding of LP as well as other tea cultivars and varieties.http://dx.doi.org/10.1080/23802359.2023.2250072camellia sinensischloroplast genomeliupao teaphylogeny |
| spellingShingle | Yan-Ni Liang Hong Li Xi-Yang Huang Yue-Jing Bin Yu-Mei Zhen Xin-Mei Qin The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China Mitochondrial DNA. Part B. Resources camellia sinensis chloroplast genome liupao tea phylogeny |
| title | The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China |
| title_full | The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China |
| title_fullStr | The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China |
| title_full_unstemmed | The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China |
| title_short | The complete chloroplast genome and phylogenomic analysis of Camellia sinensis var. sinensis cultivar ‘Liupao’, a landrace from Guangxi, China |
| title_sort | complete chloroplast genome and phylogenomic analysis of camellia sinensis var sinensis cultivar liupao a landrace from guangxi china |
| topic | camellia sinensis chloroplast genome liupao tea phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2023.2250072 |
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