Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position
The complete mitogenome sequence of Coilia brachygnathus (Kreyenberg & Pappenheim, 1908) from Wabu Lake in Huai River Basin was annotated and characterized in this study. This mitochondrial genome is a circular DNA molecule of 16.896 bp in size with 57.52% AT content, including 13 protein-coding...
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| Format: | Article |
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Taylor & Francis Group
2022-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2097487 |
| _version_ | 1827772199646265344 |
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| author | Yuan Tian Tiezhu Yang Shijie Yang Leping Wang Liangjie Zhao Wenhao Sun |
| author_facet | Yuan Tian Tiezhu Yang Shijie Yang Leping Wang Liangjie Zhao Wenhao Sun |
| author_sort | Yuan Tian |
| collection | DOAJ |
| description | The complete mitogenome sequence of Coilia brachygnathus (Kreyenberg & Pappenheim, 1908) from Wabu Lake in Huai River Basin was annotated and characterized in this study. This mitochondrial genome is a circular DNA molecule of 16.896 bp in size with 57.52% AT content, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and an AT-rich region (control region) as other bony fishes. There are a total of 10 overlap locations and 15 intergenic spacer regions throughout the mitogenome of C. brachygnathus. All PCGs employed a standard ATG as a start codon, except cytochrome c oxidase 1 (cox1) with GTG. In addition, TAA or TAG was identified as the typical stop codon. A phylogenetic tree reconstructed with the maximum likelihood method depicted a clone relationship with eight species of genus Coilia and our previous study based on the amino acid sequences of 13 mitochondrial PCGs. The complete mitochondrial genome is a valuable resource in classifying and conserving C. brachygnathus. |
| first_indexed | 2024-03-11T13:05:58Z |
| format | Article |
| id | doaj.art-db3c619abde74819b0eedebdd2cb413b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:58Z |
| publishDate | 2022-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-db3c619abde74819b0eedebdd2cb413b2023-11-03T14:44:03ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-07-01771288129010.1080/23802359.2022.20974872097487Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic positionYuan Tian0Tiezhu Yang1Shijie Yang2Leping Wang3Liangjie Zhao4Wenhao Sun5School of Fisheries, Xinyang Agriculture and Forestry UniversitySchool of Fisheries, Xinyang Agriculture and Forestry UniversityXinyang Nanwan Reservoir Fishery Development Co. Ltd.Bureau of Agriculture and Rural Affairs of the Zhumadian CitySchool of Fisheries, Xinyang Agriculture and Forestry UniversitySchool of Fisheries, Xinyang Agriculture and Forestry UniversityThe complete mitogenome sequence of Coilia brachygnathus (Kreyenberg & Pappenheim, 1908) from Wabu Lake in Huai River Basin was annotated and characterized in this study. This mitochondrial genome is a circular DNA molecule of 16.896 bp in size with 57.52% AT content, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and an AT-rich region (control region) as other bony fishes. There are a total of 10 overlap locations and 15 intergenic spacer regions throughout the mitogenome of C. brachygnathus. All PCGs employed a standard ATG as a start codon, except cytochrome c oxidase 1 (cox1) with GTG. In addition, TAA or TAG was identified as the typical stop codon. A phylogenetic tree reconstructed with the maximum likelihood method depicted a clone relationship with eight species of genus Coilia and our previous study based on the amino acid sequences of 13 mitochondrial PCGs. The complete mitochondrial genome is a valuable resource in classifying and conserving C. brachygnathus.http://dx.doi.org/10.1080/23802359.2022.2097487coilia brachygnathusmitochondrial genomehuai riverphylogenetic analysis |
| spellingShingle | Yuan Tian Tiezhu Yang Shijie Yang Leping Wang Liangjie Zhao Wenhao Sun Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position Mitochondrial DNA. Part B. Resources coilia brachygnathus mitochondrial genome huai river phylogenetic analysis |
| title | Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position |
| title_full | Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position |
| title_fullStr | Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position |
| title_full_unstemmed | Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position |
| title_short | Characterization of the complete mitochondrial genome sequence of Coilia brachygnathus (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position |
| title_sort | characterization of the complete mitochondrial genome sequence of coilia brachygnathus clupeiformes engraulidae from huai river and its phylogenetic position |
| topic | coilia brachygnathus mitochondrial genome huai river phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2022.2097487 |
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