Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity

Abstract Mitochondrial apoptosis is strictly controlled by BCL-2 family proteins through a subtle network of protein interactions. The tumor suppressor protein p53 triggers transcription-independent apoptosis through direct interactions with BCL-2 family proteins, but the molecular mechanism is not...

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Main Authors: Hudie Wei, Haolan Wang, Genxin Wang, Lingzhi Qu, Longying Jiang, Shuyan Dai, Xiaojuan Chen, Ye Zhang, Zhuchu Chen, Youjun Li, Ming Guo, Yongheng Chen
Format: Article
Language:English
Published: Nature Portfolio 2023-07-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-40087-2
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author Hudie Wei
Haolan Wang
Genxin Wang
Lingzhi Qu
Longying Jiang
Shuyan Dai
Xiaojuan Chen
Ye Zhang
Zhuchu Chen
Youjun Li
Ming Guo
Yongheng Chen
author_facet Hudie Wei
Haolan Wang
Genxin Wang
Lingzhi Qu
Longying Jiang
Shuyan Dai
Xiaojuan Chen
Ye Zhang
Zhuchu Chen
Youjun Li
Ming Guo
Yongheng Chen
author_sort Hudie Wei
collection DOAJ
description Abstract Mitochondrial apoptosis is strictly controlled by BCL-2 family proteins through a subtle network of protein interactions. The tumor suppressor protein p53 triggers transcription-independent apoptosis through direct interactions with BCL-2 family proteins, but the molecular mechanism is not well understood. In this study, we present three crystal structures of p53-DBD in complex with the anti-apoptotic protein BCL-2 at resolutions of 2.3–2.7 Å. The structures show that two loops of p53-DBD penetrate directly into the BH3-binding pocket of BCL-2. Structure-based mutations at the interface impair the p53/BCL-2 interaction. Specifically, the binding sites for p53 and the pro-apoptotic protein Bax in the BCL-2 pocket are mostly identical. In addition, formation of the p53/BCL-2 complex is negatively correlated with the formation of BCL-2 complexes with pro-apoptotic BCL-2 family members. Defects in the p53/BCL-2 interaction attenuate p53-mediated cell apoptosis. Overall, our study provides a structural basis for the interaction between p53 and BCL-2, and suggests a molecular mechanism by which p53 regulates transcription-independent apoptosis by antagonizing the interaction of BCL-2 with pro-apoptotic BCL-2 family members.
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spelling doaj.art-db48de5db5fe4d37941c8b75ef220bd12023-07-23T11:20:15ZengNature PortfolioNature Communications2041-17232023-07-0114111310.1038/s41467-023-40087-2Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activityHudie Wei0Haolan Wang1Genxin Wang2Lingzhi Qu3Longying Jiang4Shuyan Dai5Xiaojuan Chen6Ye Zhang7Zhuchu Chen8Youjun Li9Ming Guo10Yongheng Chen11Department of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Wuhan UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Wuhan UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityDepartment of Oncology, NHC Key Laboratory of Cancer Proteomics & State Local Joint Engineering Laboratroy for Anticancer Drugs, National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South UniversityAbstract Mitochondrial apoptosis is strictly controlled by BCL-2 family proteins through a subtle network of protein interactions. The tumor suppressor protein p53 triggers transcription-independent apoptosis through direct interactions with BCL-2 family proteins, but the molecular mechanism is not well understood. In this study, we present three crystal structures of p53-DBD in complex with the anti-apoptotic protein BCL-2 at resolutions of 2.3–2.7 Å. The structures show that two loops of p53-DBD penetrate directly into the BH3-binding pocket of BCL-2. Structure-based mutations at the interface impair the p53/BCL-2 interaction. Specifically, the binding sites for p53 and the pro-apoptotic protein Bax in the BCL-2 pocket are mostly identical. In addition, formation of the p53/BCL-2 complex is negatively correlated with the formation of BCL-2 complexes with pro-apoptotic BCL-2 family members. Defects in the p53/BCL-2 interaction attenuate p53-mediated cell apoptosis. Overall, our study provides a structural basis for the interaction between p53 and BCL-2, and suggests a molecular mechanism by which p53 regulates transcription-independent apoptosis by antagonizing the interaction of BCL-2 with pro-apoptotic BCL-2 family members.https://doi.org/10.1038/s41467-023-40087-2
spellingShingle Hudie Wei
Haolan Wang
Genxin Wang
Lingzhi Qu
Longying Jiang
Shuyan Dai
Xiaojuan Chen
Ye Zhang
Zhuchu Chen
Youjun Li
Ming Guo
Yongheng Chen
Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
Nature Communications
title Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
title_full Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
title_fullStr Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
title_full_unstemmed Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
title_short Structures of p53/BCL-2 complex suggest a mechanism for p53 to antagonize BCL-2 activity
title_sort structures of p53 bcl 2 complex suggest a mechanism for p53 to antagonize bcl 2 activity
url https://doi.org/10.1038/s41467-023-40087-2
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