| Summary: | <p>Abstract</p> <p>Background</p> <p>Rapid diagnostic tests (RDTs) are becoming increasingly indispensable in malaria management, as a means of increasing the accuracy of diagnosis. The WHO has issued recommendations, but the selection of the most suitable RDT remains difficult for users in endemic countries. The genetic variability of the antigens detected with RDTs has been little studied, but may affect the sensitivity of RDTs. This factor has been studied by comparisons between countries at continental level, but little information is available concerning antigen variability within a given country.</p> <p>Methods</p> <p>A country-wide assessment of polymorphism of the PfHRP2, PfHRP3, pLDH and aldolase antigens was carried out in 260 <it>Plasmodium falciparum </it>and 127 <it>Plasmodium vivax </it>isolates, by sequencing the genes encoding these antigens in parasites originating from the various epidemiological strata for malaria in Madagascar.</p> <p>Results</p> <p>Higher levels of polymorphism were observed for the <it>pfhrp2 </it>and <it>pfhrp3 </it>genes than for the <it>P. falciparum </it>and <it>P. vivax aldolase </it>and <it>pldh </it>genes. <it>Pfhrp2 </it>sequence analysis predicted that 9% of Malagasy isolates would not be detected at parasite densities ≤ 250 parasites/μl (ranging from 6% in the north to 14% in the south), although RDTs based on PfHRP2 detection are now recommended in Madagascar.</p> <p>Conclusion</p> <p>These findings highlight the importance of training of health workers and the end users of RDTs in the provision of information about the possibility of false-negative results for patients with clinical symptoms of malaria, particularly in the south of Madagascar.</p>
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