Reconstruction and Dynamics of the Human Intestinal Microbiome Observed In Situ

Reconstruction and Dynamics of the Human Intestinal Microbiome Observed In Situ

The human gut microbiome has primarily been studied through the use of fecal samples, a practice that has generated vital knowledge on the composition and functional capacities of gastrointestinal microbial communities. However, this reliance on fecal materials limits the investigation of microbial...

Full description

Bibliographic Details
Main Authors:	Xiaolin Liu, Min Dai, Yue Ma, Na Zhao, Ziyu Wang, Ying Yu, Yakun Xu, Huijie Zhang, Liyuan Xiang, He Tian, Guanghou Shui, Faming Zhang, Jun Wang
Format:	Article
Language:	English
Published:	Elsevier 2022-08-01
Series:	Engineering
Subjects:	Diurnal rhythm Reconstruction Metagenome Metatranscriptome Metabolome Transendoscopic enteral tubing
Online Access:	http://www.sciencedirect.com/science/article/pii/S209580992100196X

Similar Items

Colonic transendoscopic tube-delivered enteral therapy (with video): a prospective study
by: Ting Zhang, et al.
Published: (2020-05-01)

The bowel preparation for magnetic resonance enterography in patients with Crohn’s disease: study protocol for a randomized controlled trial
by: Min Dai, et al.
Published: (2019-01-01)

A novel quick transendoscopic enteral tubing in mid-gut: technique and training with video
by: Chuyan Long, et al.
Published: (2018-03-01)

The Next Generation Fecal Microbiota Transplantation: To Transplant Bacteria or Virome
by: You Yu, et al.
Published: (2023-12-01)

Colonic Transendoscopic Enteral Tubing Is a New Pathway to Microbial Therapy, Colonic Drainage, and Host–Microbiota Interaction Research
by: Weihong Wang, et al.
Published: (2023-01-01)

Initial experience of fecal microbiota transplantation in gastrointestinal disease: A case series
by: Jiunn‐Wei Wang, et al.
Published: (2019-09-01)

Strain Tracking to Identify Individualized Patterns of Microbial Strain Stability in the Developing Infant Gut Ecosystem
by: Hyunmin Koo, et al.
Published: (2020-09-01)

Methodology, efficacy and safety of fecal microbiota transplantation in treating inflammatory bowel disease
by: Xiao Ding, et al.
Published: (2020-12-01)

Temporal transcriptional patterns of cyanophage genes suggest synchronized infection of cyanobacteria in the oceans
by: Yue Chen, et al.
Published: (2020-05-01)

Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
by: Susana Martínez Arbas, et al.
Published: (2021-06-01)

Consistency across multi‐omics layers in a drug‐perturbed gut microbial community
by: Sander Wuyts, et al.
Published: (2023-09-01)

Microbiomes, Their Function, and Cancer: How Metatranscriptomics Can Close the Knowledge Gap
by: Lina Aitmanaitė, et al.
Published: (2023-09-01)

Multi-Omic Analysis in a Metabolic Syndrome Porcine Model Implicates Arachidonic Acid Metabolism Disorder as a Risk Factor for Atherosclerosis
by: Song-Song Xu, et al.
Published: (2022-02-01)

Decoding populations in the ocean microbiome
by: Ramiro Logares
Published: (2024-04-01)

Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine
by: Mika Uehara, et al.
Published: (2022-10-01)

Metagenomic and metatranscriptomic analysis of saliva reveals disease-associated microbiota in patients with periodontitis and dental caries
by: Drautz-Moses, Daniela Isabel, et al.
Published: (2018)

Exercise and Gut Microbiome: Trends and Advances in Research Methods
by: Kyung-Wan Baek, et al.
Published: (2022-11-01)

Tick-Tock Consider the Clock: The Influence of Circadian and External Cycles on Time of Day Variation in the Human Metabolome—A Review
by: Thomas P. M. Hancox, et al.
Published: (2021-05-01)

Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches
by: Muneer A. Malla, et al.
Published: (2018-06-01)

Using omics and integrated multi-omics approaches to guide probiotic selection to mitigate chytridiomycosis and other emerging infectious diseases
by: Eria Alaide Rebollar, et al.
Published: (2016-02-01)

“Omics” Technologies for the Study of Soil Carbon Stabilization: A Review
by: David P. Overy, et al.
Published: (2021-04-01)

Consumption of a Western-Style Diet Modulates the Response of the Murine Gut Microbiome to Ciprofloxacin
by: Damien J. Cabral, et al.
Published: (2020-08-01)

Systems-based approaches to unravel multi-species microbial community functioning
by: Florence Abram
Published: (2015-01-01)

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information
by: Ana Georgina Cobián Güemes, et al.
Published: (2019-04-01)

Multiomics Characterization of the Canada Goose Fecal Microbiome Reveals Selective Efficacy of Simulated Metagenomes
by: Joshua C. Gil, et al.
Published: (2022-12-01)

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
by: Chengsheng Zhu, et al.
Published: (2020-09-01)

Invited review: Application of meta-omics to understand the dynamic nature of the rumen microbiome and how it responds to diet in ruminants
by: R.J. Gruninger, et al.
Published: (2019-01-01)

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome
by: Yunzeng Zhang, et al.
Published: (2017-08-01)

Investigating microbiome and transcriptome data to uncover the key microbial community involved in lignocellulose degradation within the Deulajhari hot spring consortium
by: Sangita Dixit, et al.
Published: (2023-12-01)

Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits
by: Thangasamy Saminathan, et al.
Published: (2018-01-01)

Interrogating the role of the milk microbiome in mastitis in the multi-omics era
by: Sneha P. Couvillion, et al.
Published: (2023-02-01)

Characterization of the Microbiome at the World’s Largest Potable Water Reuse Facility
by: Blake W. Stamps, et al.
Published: (2018-10-01)

Expressions of resistome is linked to the key functions and stability of active rumen microbiome
by: Tao Ma, et al.
Published: (2022-06-01)

Current State and Challenges of the Global Outcomes of Dental Caries Research in the Meta-Omics Era
by: Dina G. Moussa, et al.
Published: (2022-06-01)

Integrated meta-omics reveals new ruminal microbial features associated with feed efficiency in dairy cattle
by: Ming-Yuan Xue, et al.
Published: (2022-02-01)

Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments
by: S. L. Tsola, et al.
Published: (2024-01-01)

Dysbiotic microbes and how to find them: a review of microbiome profiling in prostate cancer
by: Paul Vinu Salachan, et al.
Published: (2022-01-01)

Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome
by: Lucas William Mendes, et al.
Published: (2023-08-01)

Omic applications to understand food system microbiomes
by: Jessica Gray
Published: (2022-01-01)

The Skin Microbiome: Current Techniques, Challenges, and Future Directions
by: Tasha M. Santiago-Rodriguez, et al.
Published: (2023-05-01)