RNAbrowse: RNA-Seq de novo assembly results browser.
Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse....
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2014-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC4019526?pdf=render |
| _version_ | 1818535690933108736 |
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| author | Jérôme Mariette Céline Noirot Ibounyamine Nabihoudine Philippe Bardou Claire Hoede Anis Djari Cédric Cabau Christophe Klopp |
| author_facet | Jérôme Mariette Céline Noirot Ibounyamine Nabihoudine Philippe Bardou Claire Hoede Anis Djari Cédric Cabau Christophe Klopp |
| author_sort | Jérôme Mariette |
| collection | DOAJ |
| description | Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse. |
| first_indexed | 2024-12-11T18:28:17Z |
| format | Article |
| id | doaj.art-dd72dee58c954a4184414226df00ecfa |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-11T18:28:17Z |
| publishDate | 2014-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-dd72dee58c954a4184414226df00ecfa2022-12-22T00:55:00ZengPublic Library of Science (PLoS)PLoS ONE1932-62032014-01-0195e9682110.1371/journal.pone.0096821RNAbrowse: RNA-Seq de novo assembly results browser.Jérôme MarietteCéline NoirotIbounyamine NabihoudinePhilippe BardouClaire HoedeAnis DjariCédric CabauChristophe KloppTranscriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.http://europepmc.org/articles/PMC4019526?pdf=render |
| spellingShingle | Jérôme Mariette Céline Noirot Ibounyamine Nabihoudine Philippe Bardou Claire Hoede Anis Djari Cédric Cabau Christophe Klopp RNAbrowse: RNA-Seq de novo assembly results browser. PLoS ONE |
| title | RNAbrowse: RNA-Seq de novo assembly results browser. |
| title_full | RNAbrowse: RNA-Seq de novo assembly results browser. |
| title_fullStr | RNAbrowse: RNA-Seq de novo assembly results browser. |
| title_full_unstemmed | RNAbrowse: RNA-Seq de novo assembly results browser. |
| title_short | RNAbrowse: RNA-Seq de novo assembly results browser. |
| title_sort | rnabrowse rna seq de novo assembly results browser |
| url | http://europepmc.org/articles/PMC4019526?pdf=render |
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