Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes.
Mechanical forces, actin filament turnover, and adhesion to the extracellular environment regulate lamellipodial protrusions. Computational and mathematical models at the continuum level have been used to investigate the molecular clutch mechanism, calculating the stress profile through the lamellip...
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2021-10-01
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| Series: | PLoS Computational Biology |
| Online Access: | https://doi.org/10.1371/journal.pcbi.1009506 |
| _version_ | 1819101846314156032 |
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| author | David M Rutkowski Dimitrios Vavylonis |
| author_facet | David M Rutkowski Dimitrios Vavylonis |
| author_sort | David M Rutkowski |
| collection | DOAJ |
| description | Mechanical forces, actin filament turnover, and adhesion to the extracellular environment regulate lamellipodial protrusions. Computational and mathematical models at the continuum level have been used to investigate the molecular clutch mechanism, calculating the stress profile through the lamellipodium and around focal adhesions. However, the forces and deformations of individual actin filaments have not been considered while interactions between actin networks and actin bundles is not easily accounted with such methods. We develop a filament-level model of a lamellipodial actin network undergoing retrograde flow using 3D Brownian dynamics. Retrograde flow is promoted in simulations by pushing forces from the leading edge (due to actin polymerization), pulling forces (due to molecular motors), and opposed by viscous drag in cytoplasm and focal adhesions. Simulated networks have densities similar to measurements in prior electron micrographs. Connectivity between individual actin segments is maintained by permanent and dynamic crosslinkers. Remodeling of the network occurs via the addition of single actin filaments near the leading edge and via filament bond severing. We investigated how several parameters affect the stress distribution, network deformation and retrograde flow speed. The model captures the decrease in retrograde flow upon increase of focal adhesion strength. The stress profile changes from compression to extension across the leading edge, with regions of filament bending around focal adhesions. The model reproduces the observed reduction in retrograde flow speed upon exposure to cytochalasin D, which halts actin polymerization. Changes in crosslinker concentration and dynamics, as well as in the orientation pattern of newly added filaments demonstrate the model's ability to generate bundles of filaments perpendicular (actin arcs) or parallel (microspikes) to the protruding direction. |
| first_indexed | 2024-12-22T01:25:09Z |
| format | Article |
| id | doaj.art-dd81322becda4842808da3d1062e3051 |
| institution | Directory Open Access Journal |
| issn | 1553-734X 1553-7358 |
| language | English |
| last_indexed | 2024-12-22T01:25:09Z |
| publishDate | 2021-10-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS Computational Biology |
| spelling | doaj.art-dd81322becda4842808da3d1062e30512022-12-21T18:43:38ZengPublic Library of Science (PLoS)PLoS Computational Biology1553-734X1553-73582021-10-011710e100950610.1371/journal.pcbi.1009506Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes.David M RutkowskiDimitrios VavylonisMechanical forces, actin filament turnover, and adhesion to the extracellular environment regulate lamellipodial protrusions. Computational and mathematical models at the continuum level have been used to investigate the molecular clutch mechanism, calculating the stress profile through the lamellipodium and around focal adhesions. However, the forces and deformations of individual actin filaments have not been considered while interactions between actin networks and actin bundles is not easily accounted with such methods. We develop a filament-level model of a lamellipodial actin network undergoing retrograde flow using 3D Brownian dynamics. Retrograde flow is promoted in simulations by pushing forces from the leading edge (due to actin polymerization), pulling forces (due to molecular motors), and opposed by viscous drag in cytoplasm and focal adhesions. Simulated networks have densities similar to measurements in prior electron micrographs. Connectivity between individual actin segments is maintained by permanent and dynamic crosslinkers. Remodeling of the network occurs via the addition of single actin filaments near the leading edge and via filament bond severing. We investigated how several parameters affect the stress distribution, network deformation and retrograde flow speed. The model captures the decrease in retrograde flow upon increase of focal adhesion strength. The stress profile changes from compression to extension across the leading edge, with regions of filament bending around focal adhesions. The model reproduces the observed reduction in retrograde flow speed upon exposure to cytochalasin D, which halts actin polymerization. Changes in crosslinker concentration and dynamics, as well as in the orientation pattern of newly added filaments demonstrate the model's ability to generate bundles of filaments perpendicular (actin arcs) or parallel (microspikes) to the protruding direction.https://doi.org/10.1371/journal.pcbi.1009506 |
| spellingShingle | David M Rutkowski Dimitrios Vavylonis Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. PLoS Computational Biology |
| title | Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. |
| title_full | Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. |
| title_fullStr | Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. |
| title_full_unstemmed | Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. |
| title_short | Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes. |
| title_sort | discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes |
| url | https://doi.org/10.1371/journal.pcbi.1009506 |
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