Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)
Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collect...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1545529 |
| _version_ | 1797640581118164992 |
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| author | Jae-Hyeon Jeon Hyun-Seung Park Jee Young Park Tae Sun Kang Kisung Kwon Yeon Bok Kim Jong-Won Han Seung Hyun Kim Sang Hyun Sung Tae-Jin Yang |
| author_facet | Jae-Hyeon Jeon Hyun-Seung Park Jee Young Park Tae Sun Kang Kisung Kwon Yeon Bok Kim Jong-Won Han Seung Hyun Kim Sang Hyun Sung Tae-Jin Yang |
| author_sort | Jae-Hyeon Jeon |
| collection | DOAJ |
| description | Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species. |
| first_indexed | 2024-03-11T13:33:55Z |
| format | Article |
| id | doaj.art-dd92fa8c19104a15a9306187cf4875eb |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:55Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-dd92fa8c19104a15a9306187cf4875eb2023-11-02T16:07:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014117617710.1080/23802359.2018.15455291545529Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)Jae-Hyeon Jeon0Hyun-Seung Park1Jee Young Park2Tae Sun Kang3Kisung Kwon4Yeon Bok Kim5Jong-Won Han6Seung Hyun Kim7Sang Hyun Sung8Tae-Jin Yang9Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National UniversityPlant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National UniversityPlant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National UniversityNational Institute of Food and Drug Safety Evaluation, Ministry of Food and Drug SafetyNational Institute of Food and Drug Safety Evaluation, Ministry of Food and Drug SafetyKorea National College of Agriculture and FisheriesNational Institute of Horticultural and Herbal ScienceYonsei Institute of Pharmaceutical Sciences, Yonsei UniversityResearch Institute of Pharmaceutical Science, Seoul National UniversityPlant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National UniversityRehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.http://dx.doi.org/10.1080/23802359.2018.1545529rehmannia glutinosachloroplast genomephylogeny |
| spellingShingle | Jae-Hyeon Jeon Hyun-Seung Park Jee Young Park Tae Sun Kang Kisung Kwon Yeon Bok Kim Jong-Won Han Seung Hyun Kim Sang Hyun Sung Tae-Jin Yang Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) Mitochondrial DNA. Part B. Resources rehmannia glutinosa chloroplast genome phylogeny |
| title | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
| title_full | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
| title_fullStr | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
| title_full_unstemmed | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
| title_short | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
| title_sort | two complete chloroplast genome sequences and intra species diversity for rehmannia glutinosa orobanchaceae |
| topic | rehmannia glutinosa chloroplast genome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2018.1545529 |
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