A Pipeline NanoTRF as a New Tool for <i>De Novo</i> Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes

A Pipeline NanoTRF as a New Tool for <i>De Novo</i> Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes

High-copy tandemly organized repeats (TRs), or satellite DNA, is an important but still enigmatic component of eukaryotic genomes. TRs comprise arrays of multi-copy and highly similar tandem repeats, which makes the elucidation of TRs a very challenging task. Oxford Nanopore sequencing data provide...

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Bibliographic Details
Main Authors: Ilya Kirov, Elizaveta Kolganova, Maxim Dudnikov, Olga Yu. Yurkevich, Alexandra V. Amosova, Olga V. Muravenko
Format: Article
Language:English
Published: MDPI AG 2022-08-01
Series:Plants
Subjects:
satellite DNA
Nanopore sequencing
genome
tandem repeats
pipeline
Online Access:https://www.mdpi.com/2223-7747/11/16/2103

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https://www.mdpi.com/2223-7747/11/16/2103

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