Integrated Proteomics and Transcriptomics Analyses Reveal the Transcriptional Slippage of a Bymovirus P3N-PIPO Gene Expressed from a PVX Vector in <i>Nicotiana benthamiana</i>

P3N-PIPO (P3 N-terminal fused with Pretty Interesting Potyviridae ORF), the movement protein of potyviruses, is expressed as a translational fusion with the N-terminus of P3 in potyviruses. As reported in previous studies, P3N-PIPO is expressed via transcriptional slippage at a conserved G<sub>...

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Bibliographic Details
Main Authors: Chulang Yu, Runpu Miao, Zhuangxin Ye, Stuart MacFarlane, Yuwen Lu, Junmin Li, Jian Yang, Fei Yan, Liangying Dai, Jianping Chen
Format: Article
Language:English
Published: MDPI AG 2021-06-01
Series:Viruses
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Online Access:https://www.mdpi.com/1999-4915/13/7/1247
Description
Summary:P3N-PIPO (P3 N-terminal fused with Pretty Interesting Potyviridae ORF), the movement protein of potyviruses, is expressed as a translational fusion with the N-terminus of P3 in potyviruses. As reported in previous studies, P3N-PIPO is expressed via transcriptional slippage at a conserved G<sub>2</sub>A<sub>6</sub> slippery site in the genus <i>Potyvirus</i>. However, it is still unknown whether a similar expression mechanism of P3N-PIPO is used in the other genera of the family <i>Potyviridae</i>. Moreover, due to the extremely low expression level of P3N-PIPO in natural virus-infected plants, the peptides spanning the slippery site which provide direct evidence of the slippage at the protein level, have not been identified yet. In this study, a potato virus X (PVX)-based expression vector was utilized to investigate the expression mechanism of P3N-PIPO. A high expression level of the P3N-PIPO(WT) of turnip mosaic virus (TuMV, genus <i>Potyvirus</i>) was observed based on the PVX expression vector. For the first time, we successfully identified the peptides of P3N-PIPO spanning the slippery site by mass spectrometry. Likewise, the P3N-PIPO(WT) of wheat yellow mosaic virus (WYMV, genus <i>Bymovirus</i>) was also successfully expressed using the PVX expression vector. Integrated proteome and transcriptome analyses revealed that WYMV P3N-PIPO was expressed at the conserved G<sub>2</sub>A<sub>6</sub> site through transcriptional slippage. Moreover, as revealed by mutagenesis analysis, Hexa-adenosine of the G<sub>2</sub>A<sub>6</sub> site was important for the frameshift expression of P3N-PIPO in WYMV. According to our results, the PVX-based expression vector might be used as an excellent tool to study the expression mechanism of P3N-PIPO in <i>Potyviridae</i>. To the best of our knowledge, this is the first experimental evidence dissecting the expression mechanism of a bymovirus P3N-PIPO in the experimental host <i>Nicotiana benthamiana</i>.
ISSN:1999-4915