The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity
<p>Abstract</p> <p>Background</p> <p>The square halophilic archaeon <it>Haloquadratum walsbyi </it>dominates NaCl-saturated and MgCl<sub>2 </sub>enriched aquatic ecosystems, which imposes a serious desiccation stress, caused by the extremely low...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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BMC
2006-07-01
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| Series: | BMC Genomics |
| Online Access: | http://www.biomedcentral.com/1471-2164/7/169 |
| _version_ | 1818531065128550400 |
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| author | Rodriguez-Valera Francisco Rampp Markus Falb Michaela Wende Andy Palm Peter Bolhuis Henk Pfeiffer Friedhelm Oesterhelt Dieter |
| author_facet | Rodriguez-Valera Francisco Rampp Markus Falb Michaela Wende Andy Palm Peter Bolhuis Henk Pfeiffer Friedhelm Oesterhelt Dieter |
| author_sort | Rodriguez-Valera Francisco |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>The square halophilic archaeon <it>Haloquadratum walsbyi </it>dominates NaCl-saturated and MgCl<sub>2 </sub>enriched aquatic ecosystems, which imposes a serious desiccation stress, caused by the extremely low water activity. The genome sequence was analyzed and physiological and physical experiments were carried out in order to reveal how <it>H. walsbyi </it>has specialized into its narrow and hostile ecological niche and found ways to cope with the desiccation stress.</p> <p>Results</p> <p>A rich repertoire of proteins involved in phosphate metabolism, phototrophic growth and extracellular protective polymers, including the largest archaeal protein (9159 amino acids), a homolog to eukaryotic mucins, are amongst the most outstanding features. A relatively low GC content (47.9%), 15–20% less than in other halophilic archaea, and one of the lowest coding densities (76.5%) known for prokaryotes might be an indication for the specialization in its unique environment</p> <p>Conclusion</p> <p>Although no direct genetic indication was found that can explain how this peculiar organism retains its square shape, the genome revealed several unique adaptive traits that allow this organism to thrive in its specific and extreme niche.</p> |
| first_indexed | 2024-12-11T17:27:38Z |
| format | Article |
| id | doaj.art-df83e61f653a4be39d8f2d925b63d6bc |
| institution | Directory Open Access Journal |
| issn | 1471-2164 |
| language | English |
| last_indexed | 2024-12-11T17:27:38Z |
| publishDate | 2006-07-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomics |
| spelling | doaj.art-df83e61f653a4be39d8f2d925b63d6bc2022-12-22T00:56:56ZengBMCBMC Genomics1471-21642006-07-017116910.1186/1471-2164-7-169The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activityRodriguez-Valera FranciscoRampp MarkusFalb MichaelaWende AndyPalm PeterBolhuis HenkPfeiffer FriedhelmOesterhelt Dieter<p>Abstract</p> <p>Background</p> <p>The square halophilic archaeon <it>Haloquadratum walsbyi </it>dominates NaCl-saturated and MgCl<sub>2 </sub>enriched aquatic ecosystems, which imposes a serious desiccation stress, caused by the extremely low water activity. The genome sequence was analyzed and physiological and physical experiments were carried out in order to reveal how <it>H. walsbyi </it>has specialized into its narrow and hostile ecological niche and found ways to cope with the desiccation stress.</p> <p>Results</p> <p>A rich repertoire of proteins involved in phosphate metabolism, phototrophic growth and extracellular protective polymers, including the largest archaeal protein (9159 amino acids), a homolog to eukaryotic mucins, are amongst the most outstanding features. A relatively low GC content (47.9%), 15–20% less than in other halophilic archaea, and one of the lowest coding densities (76.5%) known for prokaryotes might be an indication for the specialization in its unique environment</p> <p>Conclusion</p> <p>Although no direct genetic indication was found that can explain how this peculiar organism retains its square shape, the genome revealed several unique adaptive traits that allow this organism to thrive in its specific and extreme niche.</p>http://www.biomedcentral.com/1471-2164/7/169 |
| spellingShingle | Rodriguez-Valera Francisco Rampp Markus Falb Michaela Wende Andy Palm Peter Bolhuis Henk Pfeiffer Friedhelm Oesterhelt Dieter The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity BMC Genomics |
| title | The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity |
| title_full | The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity |
| title_fullStr | The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity |
| title_full_unstemmed | The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity |
| title_short | The genome of the square archaeon <it>Haloquadratum walsbyi</it> : life at the limits of water activity |
| title_sort | genome of the square archaeon it haloquadratum walsbyi it life at the limits of water activity |
| url | http://www.biomedcentral.com/1471-2164/7/169 |
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