Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma
The lizard Diploderma micangshanense, which belongs to the family Agamidae is endemic to China. Here, we determined the complete mitogenome of D. micangshanense using an Illumina Hiseq X Ten sequencer. This mitogenome’s structure is a typical circular molecule of 16,467 bp in length, consisting of 1...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1882908 |
| _version_ | 1797638971847606272 |
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| author | Yanping Li Yongming Wang Yinlong Bai Yunyun Lv Jianli Xiong |
| author_facet | Yanping Li Yongming Wang Yinlong Bai Yunyun Lv Jianli Xiong |
| author_sort | Yanping Li |
| collection | DOAJ |
| description | The lizard Diploderma micangshanense, which belongs to the family Agamidae is endemic to China. Here, we determined the complete mitogenome of D. micangshanense using an Illumina Hiseq X Ten sequencer. This mitogenome’s structure is a typical circular molecule of 16,467 bp in length, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The overall base composition of D. micangshanensis is 34.1% A, 23.64% T, 13.62% C, and 28.64% G with a slight AT bias of 57.74%. Most mitochondrial genes except ND6 and seven tRNAs were encoded on the heavy strand. Notably, the trnP gene was encoded on the heavy strand instead of its typical light strand position, providing an example of gene inversion in vertebrate mitogenomes. Phylogenetic analysis indicated that D. micangshanensis had a close relationship with D. zhaoermii. |
| first_indexed | 2024-03-11T13:11:05Z |
| format | Article |
| id | doaj.art-df8e824987aa4e9d95284e052b3887b5 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:05Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-df8e824987aa4e9d95284e052b3887b52023-11-03T14:08:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-016379880210.1080/23802359.2021.18829081882908Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus DiplodermaYanping Li0Yongming Wang1Yinlong Bai2Yunyun Lv3Jianli Xiong4Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Sciences, Neijiang Normal UniversityKey Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Sciences, Neijiang Normal UniversityCollege of Animal Science and Technology, Henan University of Science and TechnologyKey Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Sciences, Neijiang Normal UniversityCollege of Animal Science and Technology, Henan University of Science and TechnologyThe lizard Diploderma micangshanense, which belongs to the family Agamidae is endemic to China. Here, we determined the complete mitogenome of D. micangshanense using an Illumina Hiseq X Ten sequencer. This mitogenome’s structure is a typical circular molecule of 16,467 bp in length, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The overall base composition of D. micangshanensis is 34.1% A, 23.64% T, 13.62% C, and 28.64% G with a slight AT bias of 57.74%. Most mitochondrial genes except ND6 and seven tRNAs were encoded on the heavy strand. Notably, the trnP gene was encoded on the heavy strand instead of its typical light strand position, providing an example of gene inversion in vertebrate mitogenomes. Phylogenetic analysis indicated that D. micangshanensis had a close relationship with D. zhaoermii.http://dx.doi.org/10.1080/23802359.2021.1882908diploderma micangshanensemitochondrial dnaphylogenetic analysis |
| spellingShingle | Yanping Li Yongming Wang Yinlong Bai Yunyun Lv Jianli Xiong Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma Mitochondrial DNA. Part B. Resources diploderma micangshanense mitochondrial dna phylogenetic analysis |
| title | Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma |
| title_full | Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma |
| title_fullStr | Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma |
| title_full_unstemmed | Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma |
| title_short | Mitochondrial genome of Diploderma micangshanense and its implications for phylogeny of the genus Diploderma |
| title_sort | mitochondrial genome of diploderma micangshanense and its implications for phylogeny of the genus diploderma |
| topic | diploderma micangshanense mitochondrial dna phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1882908 |
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