Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics
In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6%...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2015-06-01
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| Series: | Genomics Data |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213596015000318 |
| _version_ | 1828872108733628416 |
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| author | Pijush Basak Arnab Pramanik Ranita Roy Dhrubajyoti Chattopadhyay Maitree Bhattacharyya |
| author_facet | Pijush Basak Arnab Pramanik Ranita Roy Dhrubajyoti Chattopadhyay Maitree Bhattacharyya |
| author_sort | Pijush Basak |
| collection | DOAJ |
| description | In this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G+C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology. |
| first_indexed | 2024-12-13T06:46:59Z |
| format | Article |
| id | doaj.art-e045038c5e324708bc8deddee2f688ce |
| institution | Directory Open Access Journal |
| issn | 2213-5960 |
| language | English |
| last_indexed | 2024-12-13T06:46:59Z |
| publishDate | 2015-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Genomics Data |
| spelling | doaj.art-e045038c5e324708bc8deddee2f688ce2022-12-21T23:56:15ZengElsevierGenomics Data2213-59602015-06-014C909210.1016/j.gdata.2015.03.014Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomicsPijush BasakArnab PramanikRanita RoyDhrubajyoti ChattopadhyayMaitree BhattacharyyaIn this present study we report the profile of bacterial community at variable depth of soil sediment in the world's largest tropical mangrove sediments of Sundarbans, India using 16S rRNA gene amplicon sequencing. Metagenome of three samples consisted of 61301 sequences with 32.0 Mbp and 55.6% G+C content. Metagenome data of this study are available at NCBI under the Biosample data base accession no. SRX883521. The taxonomic analysis of 2746 species belonged to 33 different phyla revealing the dominance of Proteobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Acidobacteria, Nitrospirae and Actinobacteria respectively. Remarkably less than 5.0% sequences belong to a poorly characterized group. Our pyrosequencing data report unfolds the bacterial community profile at different depth of soil sediment indicating the changing community pattern, in the light of specific chronology.http://www.sciencedirect.com/science/article/pii/S2213596015000318Mangrove sedimentSundarbansDifferent depth454-Amplicon sequencingBacterial community metagenomics |
| spellingShingle | Pijush Basak Arnab Pramanik Ranita Roy Dhrubajyoti Chattopadhyay Maitree Bhattacharyya Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics Genomics Data Mangrove sediment Sundarbans Different depth 454-Amplicon sequencing Bacterial community metagenomics |
| title | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
| title_full | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
| title_fullStr | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
| title_full_unstemmed | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
| title_short | Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics |
| title_sort | cataloguing the bacterial diversity of the sundarbans mangrove india in the light of metagenomics |
| topic | Mangrove sediment Sundarbans Different depth 454-Amplicon sequencing Bacterial community metagenomics |
| url | http://www.sciencedirect.com/science/article/pii/S2213596015000318 |
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