Local Similarity Search to Find Gene Indicators in Mitochondrial Genomes

Local Similarity Search to Find Gene Indicators in Mitochondrial Genomes

Given a set of nucleotide sequences we consider the problem of identifying conserved substrings occurring in homologous genes in a large number of sequences. The problem is solved by identifying certain nodes in a suffix tree containing all substrings occurring in the given nucleotide sequences. Due...

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Bibliographic Details
Main Authors: Ruby L. V. Moritz, Matthias Bernt, Martin Middendorf
Format: Article
Language:English
Published: MDPI AG 2014-03-01
Series:Biology
Subjects:
suffix tree
conserved sequence
mitochondrial genomes
annotation
Online Access:http://www.mdpi.com/2079-7737/3/1/220

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