The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species
Mitochondrial DNA (mtDNA) markers are ideal for evolutionary studies, including phylogeography, population genetics, phylogeny, etc. However, different mitochondrial genes always own different evolutionary rate. In this study, we analysed the genetic variation across the 16 complete mtDNA from 13 sp...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1481776 |
| _version_ | 1797640646800965632 |
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| author | Zuo Ruihua Jiang Ping Sun Chuanbo She Deyong Zhang Feng Hu Chaochao |
| author_facet | Zuo Ruihua Jiang Ping Sun Chuanbo She Deyong Zhang Feng Hu Chaochao |
| author_sort | Zuo Ruihua |
| collection | DOAJ |
| description | Mitochondrial DNA (mtDNA) markers are ideal for evolutionary studies, including phylogeography, population genetics, phylogeny, etc. However, different mitochondrial genes always own different evolutionary rate. In this study, we analysed the genetic variation across the 16 complete mtDNA from 13 species in the genus Papilio and recognized the best DNA barcoding for Papilio species. The mitochondrial gene arrangement for each species shares a similar order, similar to the typical Papilionidae species, which indicated the relatively conservative state of gene arrangement in Papilio. The sliding window of genetic diversity showed that there was a significant difference in the genetic diversity of each gene in the mitochondrial genome of Papilio. The relatively mean clock rate of the ND1 was broadly lower than the other genes in mitochondrial genome of Papilio; while the ATP8 owns the largest values of mean clock rate. Those results suggested that the rate of evolution of each gene is not balanced and all mitochondrial genes except ND1 and ATP8 could act as barcoding for the identification of Papilio species. The phylogenetic analyses of complete mtDNA data for 13 Papilio species divided them into five major branches, which keep the same topological structure with previous studies. |
| first_indexed | 2024-03-11T13:34:51Z |
| format | Article |
| id | doaj.art-e11fe8fc07154360a2fb788ab770bb14 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:51Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e11fe8fc07154360a2fb788ab770bb142023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013268769010.1080/23802359.2018.14817761481776The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio speciesZuo Ruihua0Jiang Ping1Sun Chuanbo2She Deyong3Zhang Feng4Hu Chaochao5West Anhui UniversityWest Anhui UniversityWest Anhui UniversityWest Anhui UniversityShanghai Ocean UniversityAnalytical and Testing Center, Nanjing Normal UniversityMitochondrial DNA (mtDNA) markers are ideal for evolutionary studies, including phylogeography, population genetics, phylogeny, etc. However, different mitochondrial genes always own different evolutionary rate. In this study, we analysed the genetic variation across the 16 complete mtDNA from 13 species in the genus Papilio and recognized the best DNA barcoding for Papilio species. The mitochondrial gene arrangement for each species shares a similar order, similar to the typical Papilionidae species, which indicated the relatively conservative state of gene arrangement in Papilio. The sliding window of genetic diversity showed that there was a significant difference in the genetic diversity of each gene in the mitochondrial genome of Papilio. The relatively mean clock rate of the ND1 was broadly lower than the other genes in mitochondrial genome of Papilio; while the ATP8 owns the largest values of mean clock rate. Those results suggested that the rate of evolution of each gene is not balanced and all mitochondrial genes except ND1 and ATP8 could act as barcoding for the identification of Papilio species. The phylogenetic analyses of complete mtDNA data for 13 Papilio species divided them into five major branches, which keep the same topological structure with previous studies.http://dx.doi.org/10.1080/23802359.2018.1481776papiliomitochondrial genomegenetic variationmean clock ratephylogeny |
| spellingShingle | Zuo Ruihua Jiang Ping Sun Chuanbo She Deyong Zhang Feng Hu Chaochao The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species Mitochondrial DNA. Part B. Resources papilio mitochondrial genome genetic variation mean clock rate phylogeny |
| title | The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species |
| title_full | The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species |
| title_fullStr | The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species |
| title_full_unstemmed | The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species |
| title_short | The analysis of genetic variation in the mitochondrial genome and its application for the identification of Papilio species |
| title_sort | analysis of genetic variation in the mitochondrial genome and its application for the identification of papilio species |
| topic | papilio mitochondrial genome genetic variation mean clock rate phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2018.1481776 |
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