The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam
Dalbergia tonkinensis is a critically vulnerable tree species that is distributed in Vietnam and Hainan Island of China. The complete chloroplast genome sequence of D. tonkinensis was characterized using Illumina pair-end sequencing. The cpDNA is 156,086 bp in length and contains a pair of 25,720 bp...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1641441 |
| _version_ | 1797639749333155840 |
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| author | Changyoung Lee Yong-In Kim Soo-Yong Kim Tran The Bach Sangmi Eum Nguyen Trung Thanh Sangho Choi |
| author_facet | Changyoung Lee Yong-In Kim Soo-Yong Kim Tran The Bach Sangmi Eum Nguyen Trung Thanh Sangho Choi |
| author_sort | Changyoung Lee |
| collection | DOAJ |
| description | Dalbergia tonkinensis is a critically vulnerable tree species that is distributed in Vietnam and Hainan Island of China. The complete chloroplast genome sequence of D. tonkinensis was characterized using Illumina pair-end sequencing. The cpDNA is 156,086 bp in length and contains a pair of 25,720 bp inverted repeats, one large single copy region of 85,761 bp, and one small single copy region of 18,885 bp. It contains 131 genes including 86 protein-coding genes, 36 tRNAs, eight rRNAs, and one pseudogene. The overall G + C content of the whole genome is 36.1%. Phylogenetic analysis based on 35 chloroplast genomes of Papilionoideae including Cercis glabra (as an outgroup) indicates that all the species of the Dalbergioids sensu lato formed a monophyletic clade and D. tonkinensis formed a sister relationship with the D. hainanensis and D. odorifera group. |
| first_indexed | 2024-03-11T13:21:59Z |
| format | Article |
| id | doaj.art-e1c7a686da9740b7902102e51514825a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:59Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e1c7a686da9740b7902102e51514825a2023-11-03T10:28:35ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422604260510.1080/23802359.2019.16414411641441The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in VietnamChangyoung Lee0Yong-In Kim1Soo-Yong Kim2Tran The Bach3Sangmi Eum4Nguyen Trung Thanh5Sangho Choi6Korea Research Institute of Bioscience and BiotechnologyHallym UniversityKorea Research Institute of Bioscience and BiotechnologyVietnam Academy of Science and Technology (VAST)Korea Research Institute of Bioscience and BiotechnologyVNU University of ScienceKorea Research Institute of Bioscience and BiotechnologyDalbergia tonkinensis is a critically vulnerable tree species that is distributed in Vietnam and Hainan Island of China. The complete chloroplast genome sequence of D. tonkinensis was characterized using Illumina pair-end sequencing. The cpDNA is 156,086 bp in length and contains a pair of 25,720 bp inverted repeats, one large single copy region of 85,761 bp, and one small single copy region of 18,885 bp. It contains 131 genes including 86 protein-coding genes, 36 tRNAs, eight rRNAs, and one pseudogene. The overall G + C content of the whole genome is 36.1%. Phylogenetic analysis based on 35 chloroplast genomes of Papilionoideae including Cercis glabra (as an outgroup) indicates that all the species of the Dalbergioids sensu lato formed a monophyletic clade and D. tonkinensis formed a sister relationship with the D. hainanensis and D. odorifera group.http://dx.doi.org/10.1080/23802359.2019.1641441dalbergia tonkinensisvulnerable specieschloroplast genomephylogenetic analysis |
| spellingShingle | Changyoung Lee Yong-In Kim Soo-Yong Kim Tran The Bach Sangmi Eum Nguyen Trung Thanh Sangho Choi The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam Mitochondrial DNA. Part B. Resources dalbergia tonkinensis vulnerable species chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam |
| title_full | The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam |
| title_fullStr | The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam |
| title_full_unstemmed | The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam |
| title_short | The complete chloroplast genome sequence of a vulnerable legume species Dalbergia tonkinensis prain in Vietnam |
| title_sort | complete chloroplast genome sequence of a vulnerable legume species dalbergia tonkinensis prain in vietnam |
| topic | dalbergia tonkinensis vulnerable species chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1641441 |
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