Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer
Xianhua Gu,1,* Honghong Shen,2,* Guangzheng Zhu,3 Xinwei Li,2 Yue Zhang,2 Rong Zhang,1 Fang Su,2 Zishu Wang2 1Department of Gynecology Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China; 2Department of Medical Oncology, First Affiliated...
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Dove Medical Press
2023-10-01
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| Series: | Journal of Inflammation Research |
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| Online Access: | https://www.dovepress.com/prognostic-model-and-tumor-immune-microenvironment-analysis-of-complem-peer-reviewed-fulltext-article-JIR |
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| author | Gu X Shen H Zhu G Li X Zhang Y Zhang R Su F Wang Z |
| author_facet | Gu X Shen H Zhu G Li X Zhang Y Zhang R Su F Wang Z |
| author_sort | Gu X |
| collection | DOAJ |
| description | Xianhua Gu,1,* Honghong Shen,2,* Guangzheng Zhu,3 Xinwei Li,2 Yue Zhang,2 Rong Zhang,1 Fang Su,2 Zishu Wang2 1Department of Gynecology Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China; 2Department of Medical Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China; 3Department of Surgical Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China*These authors contributed equally to this workCorrespondence: Fang Su; Zishu Wang, Department of Medical Oncology, The First Affiliated Hospital of Bengbu Medical College, Anhui Province Key Laboratory of Translational Cancer Research, Bengbu Medical College, 287 Changhuai Road, Bengbu, Anhui, 233004, People’s Republic of China, Tel +8613605523272 ; +86 18909620171, Email sufang2899@163.com; wzshahbb@163.comIntroduction: The complement system is integral to the innate and adaptive immune response, helping antibodies eliminate pathogens. However, the potential role of complement and its modulators in the tumor microenvironment (TME) of gastric cancer (GC) remains unclear.Methods: This study assessed the expression, frequency of somatic mutations, and copy number variations of complement family genes in GC derived from The Cancer Genome Atlas (TCGA). Lasso and Cox regression analyses were conducted to develop a prognostic model based on the complement genes family, with the training and validation sets taken from the TCGA-GC cohort (n=371) and the International Gene Expression Omnibus (GEO) cohort (n=433), correspondingly. The nomogram assessment model was used to predict patient outcomes. Additionally, the link between immune checkpoints, immune cells, and the prognostic model was investigated.Results: In contrast to patients at low risk, those at high risk had a less favorable outcome. The prognostic model-derived risk score was shown to serve as a prognostic marker of GC independently, as per the multivariate Cox analysis. Nomogram assessment showed that the model had high reliability for predicting the survival of patients with GC in the 1, 3, 5 years. Additionally, the risk score was positively linked to the expression of immune checkpoints, notably CTLA4, LAG3, PDCD1, and CD274, according to an analysis of immune processes. The core gene C5aR1 in the prognostic model was found to be upregulated in GC tissues in contrast to adjoining normal tissues, and patients with elevated expressed levels of C5aR1 had lower 10-year overall survival (OS) rates.Conclusion: Our work reveals that complement genes are associated with the diversity and complexity of TME. The complement prognosis model help improves our understanding of TME infiltration characteristics and makes immunotherapeutic strategies more effective.Keywords: complement genes, tumor microenvironment, gastric cancer, immune checkpoints, prognostic model |
| first_indexed | 2024-03-11T17:19:06Z |
| format | Article |
| id | doaj.art-e1d50f32ecfa4b4b9a5c755cf513fc94 |
| institution | Directory Open Access Journal |
| issn | 1178-7031 |
| language | English |
| last_indexed | 2024-03-11T17:19:06Z |
| publishDate | 2023-10-01 |
| publisher | Dove Medical Press |
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| series | Journal of Inflammation Research |
| spelling | doaj.art-e1d50f32ecfa4b4b9a5c755cf513fc942023-10-19T17:10:54ZengDove Medical PressJournal of Inflammation Research1178-70312023-10-01Volume 164697471187433Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric CancerGu XShen HZhu GLi XZhang YZhang RSu FWang ZXianhua Gu,1,* Honghong Shen,2,* Guangzheng Zhu,3 Xinwei Li,2 Yue Zhang,2 Rong Zhang,1 Fang Su,2 Zishu Wang2 1Department of Gynecology Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China; 2Department of Medical Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China; 3Department of Surgical Oncology, First Affiliated Hospital of Bengbu Medical College, Bengbu, People’s Republic of China*These authors contributed equally to this workCorrespondence: Fang Su; Zishu Wang, Department of Medical Oncology, The First Affiliated Hospital of Bengbu Medical College, Anhui Province Key Laboratory of Translational Cancer Research, Bengbu Medical College, 287 Changhuai Road, Bengbu, Anhui, 233004, People’s Republic of China, Tel +8613605523272 ; +86 18909620171, Email sufang2899@163.com; wzshahbb@163.comIntroduction: The complement system is integral to the innate and adaptive immune response, helping antibodies eliminate pathogens. However, the potential role of complement and its modulators in the tumor microenvironment (TME) of gastric cancer (GC) remains unclear.Methods: This study assessed the expression, frequency of somatic mutations, and copy number variations of complement family genes in GC derived from The Cancer Genome Atlas (TCGA). Lasso and Cox regression analyses were conducted to develop a prognostic model based on the complement genes family, with the training and validation sets taken from the TCGA-GC cohort (n=371) and the International Gene Expression Omnibus (GEO) cohort (n=433), correspondingly. The nomogram assessment model was used to predict patient outcomes. Additionally, the link between immune checkpoints, immune cells, and the prognostic model was investigated.Results: In contrast to patients at low risk, those at high risk had a less favorable outcome. The prognostic model-derived risk score was shown to serve as a prognostic marker of GC independently, as per the multivariate Cox analysis. Nomogram assessment showed that the model had high reliability for predicting the survival of patients with GC in the 1, 3, 5 years. Additionally, the risk score was positively linked to the expression of immune checkpoints, notably CTLA4, LAG3, PDCD1, and CD274, according to an analysis of immune processes. The core gene C5aR1 in the prognostic model was found to be upregulated in GC tissues in contrast to adjoining normal tissues, and patients with elevated expressed levels of C5aR1 had lower 10-year overall survival (OS) rates.Conclusion: Our work reveals that complement genes are associated with the diversity and complexity of TME. The complement prognosis model help improves our understanding of TME infiltration characteristics and makes immunotherapeutic strategies more effective.Keywords: complement genes, tumor microenvironment, gastric cancer, immune checkpoints, prognostic modelhttps://www.dovepress.com/prognostic-model-and-tumor-immune-microenvironment-analysis-of-complem-peer-reviewed-fulltext-article-JIRcomplement genestumor microenvironmentgastric cancerimmune checkpointsprognostic model. |
| spellingShingle | Gu X Shen H Zhu G Li X Zhang Y Zhang R Su F Wang Z Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer Journal of Inflammation Research complement genes tumor microenvironment gastric cancer immune checkpoints prognostic model. |
| title | Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer |
| title_full | Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer |
| title_fullStr | Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer |
| title_full_unstemmed | Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer |
| title_short | Prognostic Model and Tumor Immune Microenvironment Analysis of Complement-Related Genes in Gastric Cancer |
| title_sort | prognostic model and tumor immune microenvironment analysis of complement related genes in gastric cancer |
| topic | complement genes tumor microenvironment gastric cancer immune checkpoints prognostic model. |
| url | https://www.dovepress.com/prognostic-model-and-tumor-immune-microenvironment-analysis-of-complem-peer-reviewed-fulltext-article-JIR |
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