Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis
In this study, the complete chloroplast genome of the medical fern Drynaria roosii was completed and analyzed in order to understand the evolution of the genome of the fern lineages. In D. roosii, the circular double-stranded cpDNA sequence of 154,305 bp consists of two inverted repeat (IRA and IRB)...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2016.1275835 |
| _version_ | 1797640903698939904 |
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| author | Meiyu Sun Jingrui Li Dong Li Lei Shi |
| author_facet | Meiyu Sun Jingrui Li Dong Li Lei Shi |
| author_sort | Meiyu Sun |
| collection | DOAJ |
| description | In this study, the complete chloroplast genome of the medical fern Drynaria roosii was completed and analyzed in order to understand the evolution of the genome of the fern lineages. In D. roosii, the circular double-stranded cpDNA sequence of 154,305 bp consists of two inverted repeat (IRA and IRB) regions of 23,416 bp each, a large single-copy (LSC) region of 86,040 bp and a small single-copy (SSC) region of 21,433 bp. The overall GC content is 40.92% and the GC contents of LSC, IRs, and SSC are 39.75%, 45.07%, and 36.60%, respectively. D. roosii with 108 annotated unique genes included 85 protein-coding genes, 19 tRNA genes, and 4 rRNA genes. Using the whole chloroplast genome sequences alignment of 18 species from ferns, the phylogenetic relationship was built. The phylogenetic position of D. roosii was closely clustered with Adiantum capillus-veneris, Cheilanthes lindheimeri, and Pteridium aquilium subsp. Aquilinum as sister species and then clustered with Alsophila spinulosa, Lygodium japonicum, Diplopterygium glaucum, and Osmundastrum cinnamomeum. D. roosii belongs to Polypodiales. The complete chloroplast genome of D. roosii provides utility information for ferns evolutionary and genomic studies. |
| first_indexed | 2024-03-11T13:37:51Z |
| format | Article |
| id | doaj.art-e21fbdeedbd74aa2b727d11a052c4768 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:37:51Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e21fbdeedbd74aa2b727d11a052c47682023-11-02T15:42:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-01217810.1080/23802359.2016.12758351275835Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysisMeiyu Sun0Jingrui Li1Dong Li2Lei Shi3Institute of Botany, Chinese Academy of SciencesInstitute of Botany, Chinese Academy of SciencesInstitute of Botany, Chinese Academy of SciencesInstitute of Botany, Chinese Academy of SciencesIn this study, the complete chloroplast genome of the medical fern Drynaria roosii was completed and analyzed in order to understand the evolution of the genome of the fern lineages. In D. roosii, the circular double-stranded cpDNA sequence of 154,305 bp consists of two inverted repeat (IRA and IRB) regions of 23,416 bp each, a large single-copy (LSC) region of 86,040 bp and a small single-copy (SSC) region of 21,433 bp. The overall GC content is 40.92% and the GC contents of LSC, IRs, and SSC are 39.75%, 45.07%, and 36.60%, respectively. D. roosii with 108 annotated unique genes included 85 protein-coding genes, 19 tRNA genes, and 4 rRNA genes. Using the whole chloroplast genome sequences alignment of 18 species from ferns, the phylogenetic relationship was built. The phylogenetic position of D. roosii was closely clustered with Adiantum capillus-veneris, Cheilanthes lindheimeri, and Pteridium aquilium subsp. Aquilinum as sister species and then clustered with Alsophila spinulosa, Lygodium japonicum, Diplopterygium glaucum, and Osmundastrum cinnamomeum. D. roosii belongs to Polypodiales. The complete chloroplast genome of D. roosii provides utility information for ferns evolutionary and genomic studies.http://dx.doi.org/10.1080/23802359.2016.1275835chloroplast genomedrynaria roosiide novo sequencingphylogenetic relationship |
| spellingShingle | Meiyu Sun Jingrui Li Dong Li Lei Shi Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis Mitochondrial DNA. Part B. Resources chloroplast genome drynaria roosii de novo sequencing phylogenetic relationship |
| title | Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis |
| title_full | Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis |
| title_fullStr | Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis |
| title_full_unstemmed | Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis |
| title_short | Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis |
| title_sort | complete chloroplast genome sequence of the medical fern drynaria roosii and its phylogenetic analysis |
| topic | chloroplast genome drynaria roosii de novo sequencing phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2016.1275835 |
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