A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria
ABSTRACT All organisms rely on complex metabolites such as amino acids, nucleotides, and cofactors for essential metabolic processes. Some microbes synthesize these fundamental ingredients of life de novo, while others rely on uptake to fulfill their metabolic needs. Although certain metabolic proce...
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| Format: | Article |
| Language: | English |
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American Society for Microbiology
2022-08-01
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| Series: | mSystems |
| Subjects: | |
| Online Access: | https://journals.asm.org/doi/10.1128/msystems.00288-22 |
| _version_ | 1827150140451848192 |
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| author | Sebastian Gude Gordon J. Pherribo Michiko E. Taga |
| author_facet | Sebastian Gude Gordon J. Pherribo Michiko E. Taga |
| author_sort | Sebastian Gude |
| collection | DOAJ |
| description | ABSTRACT All organisms rely on complex metabolites such as amino acids, nucleotides, and cofactors for essential metabolic processes. Some microbes synthesize these fundamental ingredients of life de novo, while others rely on uptake to fulfill their metabolic needs. Although certain metabolic processes are inherently “leaky,” the mechanisms enabling stable metabolite provisioning among microbes in the absence of a host remain largely unclear. In particular, how can metabolite provisioning among free-living bacteria be maintained under the evolutionary pressure to economize resources? Salvaging, the process of “recycling and reusing,” can be a metabolically efficient route to obtain access to required resources. Here, we show experimentally how precursor salvaging in engineered Escherichia coli populations can lead to stable, long-term metabolite provisioning. We find that salvaged cobamides (vitamin B12 and related enzyme cofactors) are readily made available to nonproducing population members, yet salvagers are strongly protected from overexploitation. We also describe a previously unnoted benefit of precursor salvaging, namely, the removal of the nonfunctional, proliferation-inhibiting precursor. As long as compatible precursors are present, any microbe possessing the terminal steps of a biosynthetic process can, in principle, forgo de novo biosynthesis in favor of salvaging. Consequently, precursor salvaging likely represents a potent, yet overlooked, alternative to de novo biosynthesis for the acquisition and provisioning of metabolites in free-living bacterial populations. IMPORTANCE Recycling gives new life to old things. Bacteria have the ability to recycle and reuse complex molecules they encounter in their environment to fulfill their basic metabolic needs in a resource-efficient way. By studying the salvaging (recycling and reusing) of vitamin B12 precursors, we found that metabolite salvaging can benefit others and provide stability to a bacterial community at the same time. Salvagers of vitamin B12 precursors freely share the result of their labor yet cannot be outcompeted by freeloaders, likely because salvagers retain preferential access to the salvaging products. Thus, salvaging may represent an effective, yet overlooked, mechanism of acquiring and provisioning nutrients in microbial populations. |
| first_indexed | 2024-04-11T11:09:02Z |
| format | Article |
| id | doaj.art-e265cea7fd804765a14d94fe61293624 |
| institution | Directory Open Access Journal |
| issn | 2379-5077 |
| language | English |
| last_indexed | 2025-03-20T21:29:21Z |
| publishDate | 2022-08-01 |
| publisher | American Society for Microbiology |
| record_format | Article |
| series | mSystems |
| spelling | doaj.art-e265cea7fd804765a14d94fe612936242024-08-11T18:57:43ZengAmerican Society for MicrobiologymSystems2379-50772022-08-017410.1128/msystems.00288-22A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living BacteriaSebastian Gude0Gordon J. Pherribo1Michiko E. Taga2Department of Plant & Microbial Biology, University of California, Berkeley, Berkeley, California, USADepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, California, USADepartment of Plant & Microbial Biology, University of California, Berkeley, Berkeley, California, USAABSTRACT All organisms rely on complex metabolites such as amino acids, nucleotides, and cofactors for essential metabolic processes. Some microbes synthesize these fundamental ingredients of life de novo, while others rely on uptake to fulfill their metabolic needs. Although certain metabolic processes are inherently “leaky,” the mechanisms enabling stable metabolite provisioning among microbes in the absence of a host remain largely unclear. In particular, how can metabolite provisioning among free-living bacteria be maintained under the evolutionary pressure to economize resources? Salvaging, the process of “recycling and reusing,” can be a metabolically efficient route to obtain access to required resources. Here, we show experimentally how precursor salvaging in engineered Escherichia coli populations can lead to stable, long-term metabolite provisioning. We find that salvaged cobamides (vitamin B12 and related enzyme cofactors) are readily made available to nonproducing population members, yet salvagers are strongly protected from overexploitation. We also describe a previously unnoted benefit of precursor salvaging, namely, the removal of the nonfunctional, proliferation-inhibiting precursor. As long as compatible precursors are present, any microbe possessing the terminal steps of a biosynthetic process can, in principle, forgo de novo biosynthesis in favor of salvaging. Consequently, precursor salvaging likely represents a potent, yet overlooked, alternative to de novo biosynthesis for the acquisition and provisioning of metabolites in free-living bacterial populations. IMPORTANCE Recycling gives new life to old things. Bacteria have the ability to recycle and reuse complex molecules they encounter in their environment to fulfill their basic metabolic needs in a resource-efficient way. By studying the salvaging (recycling and reusing) of vitamin B12 precursors, we found that metabolite salvaging can benefit others and provide stability to a bacterial community at the same time. Salvagers of vitamin B12 precursors freely share the result of their labor yet cannot be outcompeted by freeloaders, likely because salvagers retain preferential access to the salvaging products. Thus, salvaging may represent an effective, yet overlooked, mechanism of acquiring and provisioning nutrients in microbial populations.https://journals.asm.org/doi/10.1128/msystems.00288-22salvagingmetabolite provisioningpartial metabolite privatizationintracellular metabolitescobamidescobalamin |
| spellingShingle | Sebastian Gude Gordon J. Pherribo Michiko E. Taga A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria mSystems salvaging metabolite provisioning partial metabolite privatization intracellular metabolites cobamides cobalamin |
| title | A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria |
| title_full | A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria |
| title_fullStr | A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria |
| title_full_unstemmed | A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria |
| title_short | A Salvaging Strategy Enables Stable Metabolite Provisioning among Free-Living Bacteria |
| title_sort | salvaging strategy enables stable metabolite provisioning among free living bacteria |
| topic | salvaging metabolite provisioning partial metabolite privatization intracellular metabolites cobamides cobalamin |
| url | https://journals.asm.org/doi/10.1128/msystems.00288-22 |
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