The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
Senna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science,...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2172973 |
| _version_ | 1797638537976217600 |
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| author | Kristine J. O. Quiñones Renerio P. Gentallan Michael C. B. Bartolome Roselle E. Madayag Juan R. A. Vera Cruz Angeleigh R. T. Cirunay Leah E. Endonela Emmanuel B. S. Timog Teresita H. Borromeo Nestor C. Altoveros Bartimeus B. S. Alvaran Jessabel B. Magtoltol Reneliza D. Cejalvo |
| author_facet | Kristine J. O. Quiñones Renerio P. Gentallan Michael C. B. Bartolome Roselle E. Madayag Juan R. A. Vera Cruz Angeleigh R. T. Cirunay Leah E. Endonela Emmanuel B. S. Timog Teresita H. Borromeo Nestor C. Altoveros Bartimeus B. S. Alvaran Jessabel B. Magtoltol Reneliza D. Cejalvo |
| author_sort | Kristine J. O. Quiñones |
| collection | DOAJ |
| description | Senna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science, University of the Philippines, Los Baños, using Illumina sequencing data. The complete cp genome was 159,176-bp long characterized by a large single copy of 88,769 bp, short single-copy of 18,301 bp and a pair of inverted repeat regions of 26,053 bp each. The overall GC content of the chloroplast genome was 36.4%. The plastome comprised 37 tRNA genes, 8 rRNA genes and 78 mRNA genes. Phylogenetic analysis showed that S. alata is closely related to S. siamea. |
| first_indexed | 2024-03-11T13:05:02Z |
| format | Article |
| id | doaj.art-e3015655f6a3437f9a7b3d88afc87a92 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:02Z |
| publishDate | 2023-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e3015655f6a3437f9a7b3d88afc87a922023-11-03T14:44:06ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-02-018224424810.1080/23802359.2023.21729732172973The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the PhilippinesKristine J. O. Quiñones0Renerio P. Gentallan1Michael C. B. Bartolome2Roselle E. Madayag3Juan R. A. Vera Cruz4Angeleigh R. T. Cirunay5Leah E. Endonela6Emmanuel B. S. Timog7Teresita H. Borromeo8Nestor C. Altoveros9Bartimeus B. S. Alvaran10Jessabel B. Magtoltol11Reneliza D. Cejalvo12Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Food Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los BañosSenna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science, University of the Philippines, Los Baños, using Illumina sequencing data. The complete cp genome was 159,176-bp long characterized by a large single copy of 88,769 bp, short single-copy of 18,301 bp and a pair of inverted repeat regions of 26,053 bp each. The overall GC content of the chloroplast genome was 36.4%. The plastome comprised 37 tRNA genes, 8 rRNA genes and 78 mRNA genes. Phylogenetic analysis showed that S. alata is closely related to S. siamea.http://dx.doi.org/10.1080/23802359.2023.2172973cassia alatafabaceaecassinaechloroplast genomemedicinal plant |
| spellingShingle | Kristine J. O. Quiñones Renerio P. Gentallan Michael C. B. Bartolome Roselle E. Madayag Juan R. A. Vera Cruz Angeleigh R. T. Cirunay Leah E. Endonela Emmanuel B. S. Timog Teresita H. Borromeo Nestor C. Altoveros Bartimeus B. S. Alvaran Jessabel B. Magtoltol Reneliza D. Cejalvo The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines Mitochondrial DNA. Part B. Resources cassia alata fabaceae cassinae chloroplast genome medicinal plant |
| title | The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines |
| title_full | The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines |
| title_fullStr | The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines |
| title_full_unstemmed | The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines |
| title_short | The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines |
| title_sort | complete chloroplast genome of senna alata l roxb an important medicinal plant from the philippines |
| topic | cassia alata fabaceae cassinae chloroplast genome medicinal plant |
| url | http://dx.doi.org/10.1080/23802359.2023.2172973 |
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