Local alignment of generalized <it>k</it>-base encoded DNA sequence
<p>Abstract</p> <p>Background</p> <p>DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however observe an encoded form of the sequence, rather than each DNA base...
Main Authors: | Nelson Stanley F, Homer Nils, Merriman Barry |
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Format: | Article |
Language: | English |
Published: |
BMC
2010-06-01
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Series: | BMC Bioinformatics |
Online Access: | http://www.biomedcentral.com/1471-2105/11/347 |
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