Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae)
The first complete mitochondrial (mt) genome of Hyporhamphus limbatus is reported herein, the gene composition and arrangement in H. limbatus mitogenome were identical to those of most vertebrates, which is 16,508 bp in length and contains 13 PCGs, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA gen...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2018-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1532342 |
| _version_ | 1797640647680720896 |
|---|---|
| author | Zhenming Lü Kehua Zhu Liqin Liu Bingjian Liu Lihua Jiang Li Gong |
| author_facet | Zhenming Lü Kehua Zhu Liqin Liu Bingjian Liu Lihua Jiang Li Gong |
| author_sort | Zhenming Lü |
| collection | DOAJ |
| description | The first complete mitochondrial (mt) genome of Hyporhamphus limbatus is reported herein, the gene composition and arrangement in H. limbatus mitogenome were identical to those of most vertebrates, which is 16,508 bp in length and contains 13 PCGs, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and a putative control region (CR) and one origin of replication on the light-strand (OL). Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser(AGY) could not fold into a typical clover-leaf secondary structure for lacking the dihydrouridine arm. A phylogenetic tree based on the neighbour-joining method was constructed to provide relationship within Beloniformes, which could be a useful basis for management of this species. |
| first_indexed | 2024-03-11T13:34:52Z |
| format | Article |
| id | doaj.art-e366efd1426144d59adc3f83dcb121c3 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:52Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-e366efd1426144d59adc3f83dcb121c32023-11-02T15:57:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-01321292129310.1080/23802359.2018.15323421532342Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae)Zhenming Lü0Kehua Zhu1Liqin Liu2Bingjian Liu3Lihua Jiang4Li Gong5Zhejiang Ocean UniversityZhejiang Ocean UniversityZhejiang Ocean UniversityZhejiang Ocean UniversityZhejiang Ocean UniversityZhejiang Ocean UniversityThe first complete mitochondrial (mt) genome of Hyporhamphus limbatus is reported herein, the gene composition and arrangement in H. limbatus mitogenome were identical to those of most vertebrates, which is 16,508 bp in length and contains 13 PCGs, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and a putative control region (CR) and one origin of replication on the light-strand (OL). Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser(AGY) could not fold into a typical clover-leaf secondary structure for lacking the dihydrouridine arm. A phylogenetic tree based on the neighbour-joining method was constructed to provide relationship within Beloniformes, which could be a useful basis for management of this species.http://dx.doi.org/10.1080/23802359.2018.1532342hyporhamphus limbatusmitogenomephylogenetic tree |
| spellingShingle | Zhenming Lü Kehua Zhu Liqin Liu Bingjian Liu Lihua Jiang Li Gong Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) Mitochondrial DNA. Part B. Resources hyporhamphus limbatus mitogenome phylogenetic tree |
| title | Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) |
| title_full | Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) |
| title_fullStr | Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) |
| title_full_unstemmed | Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) |
| title_short | Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae) |
| title_sort | phylogenetic analysis of the complete mitochondrial genome of hyporhamphus limbatus beloniformes hemiramphidae |
| topic | hyporhamphus limbatus mitogenome phylogenetic tree |
| url | http://dx.doi.org/10.1080/23802359.2018.1532342 |
| work_keys_str_mv | AT zhenminglu phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae AT kehuazhu phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae AT liqinliu phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae AT bingjianliu phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae AT lihuajiang phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae AT ligong phylogeneticanalysisofthecompletemitochondrialgenomeofhyporhamphuslimbatusbeloniformeshemiramphidae |