Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita
We present the data for the global proteome and post-translational modification mapping of Labeo rohita (Rohu) which consists of mass-spectrometric (MS) data for 8498 proteins at 1% false discovery rate, which constitutes 26% of the total protein-coding sequences in Rohu. This data consists of deep...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2022-12-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340922009507 |
| _version_ | 1811190578610700288 |
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| author | Mehar Un Nissa Anwesha Banerjee Mukunda Goswami Sanjeeva Srivastava |
| author_facet | Mehar Un Nissa Anwesha Banerjee Mukunda Goswami Sanjeeva Srivastava |
| author_sort | Mehar Un Nissa |
| collection | DOAJ |
| description | We present the data for the global proteome and post-translational modification mapping of Labeo rohita (Rohu) which consists of mass-spectrometric (MS) data for 8498 proteins at 1% false discovery rate, which constitutes 26% of the total protein-coding sequences in Rohu. This data consists of deep proteomics of 17 normal tissues including eye, spinal cord, brain, male gonad, female gonad, gill, air bladder, gall bladder, gut, liver, heart, kidney, skin, scales, muscle, fin, spleen, as well as blood plasma and embryo of Rohu. The data from SRM-based targeted analysis to validate the presence of few key proteins is also included. Global post translational modification-based analysis (global PTM) was also performed in the studied tissues and its background data is also publicly accessible. This data and the web-based proteome map may aid applied and basic research endeavors in aquaculture to meet the food demands and nutritional security challenges of an increasing world population. The data here is related to the research article “Organ-based proteome and post-translational modification profiling of a widely cultivated tropical water fish, Labeo rohita” in the Journal of Proteome Research [1]. |
| first_indexed | 2024-04-11T14:53:18Z |
| format | Article |
| id | doaj.art-e3a1cd839a74474aa428517612473d93 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-11T14:53:18Z |
| publishDate | 2022-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-e3a1cd839a74474aa428517612473d932022-12-22T04:17:22ZengElsevierData in Brief2352-34092022-12-0145108746Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohitaMehar Un Nissa0Anwesha Banerjee1Mukunda Goswami2Sanjeeva Srivastava3Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, IndiaPresidency University, 86/1 College Street Kolkata 700073, West Bengal, IndiaCentral Institute of Fisheries Education, Indian Council of Agricultural Research, Versova, Mumbai, Maharashtra 400061, IndiaDepartment of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India; Corresponding author.We present the data for the global proteome and post-translational modification mapping of Labeo rohita (Rohu) which consists of mass-spectrometric (MS) data for 8498 proteins at 1% false discovery rate, which constitutes 26% of the total protein-coding sequences in Rohu. This data consists of deep proteomics of 17 normal tissues including eye, spinal cord, brain, male gonad, female gonad, gill, air bladder, gall bladder, gut, liver, heart, kidney, skin, scales, muscle, fin, spleen, as well as blood plasma and embryo of Rohu. The data from SRM-based targeted analysis to validate the presence of few key proteins is also included. Global post translational modification-based analysis (global PTM) was also performed in the studied tissues and its background data is also publicly accessible. This data and the web-based proteome map may aid applied and basic research endeavors in aquaculture to meet the food demands and nutritional security challenges of an increasing world population. The data here is related to the research article “Organ-based proteome and post-translational modification profiling of a widely cultivated tropical water fish, Labeo rohita” in the Journal of Proteome Research [1].http://www.sciencedirect.com/science/article/pii/S2352340922009507AquacultureProtein expressionMass spectrometryLabeo rohitaPost-translational modifications |
| spellingShingle | Mehar Un Nissa Anwesha Banerjee Mukunda Goswami Sanjeeva Srivastava Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita Data in Brief Aquaculture Protein expression Mass spectrometry Labeo rohita Post-translational modifications |
| title | Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita |
| title_full | Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita |
| title_fullStr | Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita |
| title_full_unstemmed | Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita |
| title_short | Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita |
| title_sort | comprehensive data and workflow for mapping global proteome and post translational modifications in indian major carp labeo rohita |
| topic | Aquaculture Protein expression Mass spectrometry Labeo rohita Post-translational modifications |
| url | http://www.sciencedirect.com/science/article/pii/S2352340922009507 |
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